Cow genome map

Conread name: Ova1-OVRM10218A03

Conread position: 182-542
Cow position: chr21:1990951-1991292 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 235
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 6

Conread position: 215-600
Cow position: chr21:35061743-35062139 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 36

Conread position: 218-595
Cow position: chr21:15976317-15976681 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 259
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 26, 105

Conread position: 229-586
Cow position: chr21:33562707-33563049 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 251
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 29, 19

Conread position: 245-577
Cow position: chr21:23479004-23478685 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 9

Conread position: 253-586
Cow position: chr21:24222824-24222496 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 230
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 5, 73

Conread position: 256-577
Cow position: chr21:48484719-48484415 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 211, 75

Conread position: 257-562
Cow position: chr21:9710996-9710693 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 204
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 91

Conread position: 257-587
Cow position: chr21:6051205-6051545 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 230
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 67, 129

Conread position: 257-591
Cow position: chr21:33997503-33997184 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 261, 74

Conread position: 260-562
Cow position: chr21:33419991-33419706 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 60

Conread position: 261-484
Cow position: chr21:8546491-8546272 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 108, 0

Conread position: 261-500
Cow position: chr21:20549192-20548959 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 92, 0

Conread position: 261-512
Cow position: chr21:4569772-4569527 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 66

Conread position: 261-566
Cow position: chr21:39889018-39888727 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 205
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 257, 81

Conread position: 261-584
Cow position: chr21:28210911-28211233 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 90, 98

Conread position: 261-590
Cow position: chr21:36793608-36793936 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 223
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 83, 113

Conread position: 261-590
Cow position: chr21:47802536-47802218 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 226
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 218, 83

Conread position: 261-591
Cow position: chr21:725164-724837 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 230
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 209, 79

Conread position: 261-592
Cow position: chr21:20262608-20262284 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 227
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 176, 81

Conread position: 261-594
Cow position: chr21:9415969-9416296 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 234
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 180, 25

Conread position: 261-595
Cow position: chr21:23586589-23586930 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 34

Conread position: 261-595
Cow position: chr21:30849218-30848898 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 194, 61

Conread position: 261-596
Cow position: chr21:28993900-28993568 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 245
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 203, 74

Conread position: 261-599
Cow position: chr21:24698208-24698532 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 261-600
Cow position: chr21:24864881-24865213 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 239
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 193, 63

Conread position: 261-600
Cow position: chr21:28998181-28997845 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 77

Conread position: 261-600
Cow position: chr21:48291304-48291000 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 236
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 58, 0

Conread position: 261-601
Cow position: chr21:37941956-37941631 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 230
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 314, 62

Conread position: 262-572
Cow position: chr21:7564595-7564290 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 192, 54

Conread position: 262-577
Cow position: chr21:30607376-30607057 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 212
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 60, 109

Conread position: 262-587
Cow position: chr21:44755050-44754737 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 120, 62

Conread position: 262-596
Cow position: chr21:41040592-41040912 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 232
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 187, 57

Conread position: 263-517
Cow position: chr21:44804532-44804290 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 171
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 193, 59

Conread position: 263-586
Cow position: chr21:23500093-23499788 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 219
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 263-601
Cow position: chr21:24945169-24944843 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 223
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 255, 68

Conread position: 266-562
Cow position: chr21:24714374-24714674 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 15

Conread position: 267-549
Cow position: chr21:41579463-41579760 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 55, 18

Conread position: 274-572
Cow position: chr21:36819484-36819185 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 68

Conread position: 274-573
Cow position: chr21:29942740-29943030 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 274-583
Cow position: chr21:44515004-44515301 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 208
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 236, 50

Conread position: 274-591
Cow position: chr21:42540481-42540179 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 165, 68

Conread position: 275-587
Cow position: chr21:21223024-21223327 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 179, 74

Conread position: 276-584
Cow position: chr21:20160425-20160719 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 205
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 298, 66

Conread position: 283-593
Cow position: chr21:46973387-46973084 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 203
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 172, 42

Conread position: 299-583
Cow position: chr21:12973493-12973208 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 211, 20

Conread position: 300-512
Cow position: chr21:28907887-28907683 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 31, 0

Conread position: 302-570
Cow position: chr21:24669167-24669421 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 208, 73

Conread position: 305-455
Cow position: chr21:30237348-30237197 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 73

Conread position: 309-549
Cow position: chr21:27521560-27521327 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 183, 15

Conread position: 311-579
Cow position: chr21:10866637-10866913 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 190
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 21, 13

Conread position: 325-585
Cow position: chr21:17674457-17674190 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 181, 6

Conread position: 326-571
Cow position: chr21:42053485-42053240 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 175, 5

Conread position: 329-585
Cow position: chr21:12616922-12617177 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 14

Conread position: 331-566
Cow position: chr21:8618058-8618298 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 162, 46

Conread position: 331-573
Cow position: chr21:29484768-29485007 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 189, 45

Conread position: 331-581
Cow position: chr21:24094960-24094713 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 167, 46

Conread position: 331-601
Cow position: chr21:4723263-4723536 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 123, 45

Conread position: 332-590
Cow position: chr21:37361689-37361428 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 30, 123

Conread position: 334-580
Cow position: chr21:28512318-28512562 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 43

Conread position: 336-576
Cow position: chr21:27124340-27124095 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 7, 184

Conread position: 336-599
Cow position: chr21:18378634-18378894 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 217, 41

Conread position: 340-504
Cow position: chr21:28919833-28919666 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 110, 70

Conread position: 340-591
Cow position: chr21:27230002-27229748 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 132, 35

Conread position: 341-587
Cow position: chr21:4098669-4098912 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 168, 35

Conread position: 341-600
Cow position: chr21:32665978-32665723 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 100, 35

Conread position: 343-558
Cow position: chr21:42348882-42348661 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 107, 32

Conread position: 343-573
Cow position: chr21:81866-82108 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 94, 34

Conread position: 343-583
Cow position: chr21:23801325-23801090 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 176
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 175, 33

Conread position: 343-583
Cow position: chr21:38900569-38900814 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 112, 220

Conread position: 343-600
Cow position: chr21:42905582-42905319 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 155, 46

Conread position: 343-601
Cow position: chr21:39765644-39765898 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 182
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 34

Conread position: 344-600
Cow position: chr21:31576309-31576549 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 197
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 33, 54

Conread position: 345-583
Cow position: chr21:31662258-31662502 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 109, 31

Conread position: 346-512
Cow position: chr21:48108068-48107899 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 346-573
Cow position: chr21:15445280-15445045 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 121, 30

Conread position: 346-577
Cow position: chr21:912169-911935 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 6, 51

Conread position: 346-583
Cow position: chr21:33350541-33350778 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 93, 29

Conread position: 346-600
Cow position: chr21:40899135-40899391 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 108, 39

Conread position: 347-576
Cow position: chr21:42145716-42145944 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 156
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 106, 173

Conread position: 347-577
Cow position: chr21:31691277-31691514 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 159
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 100, 0

Conread position: 347-594
Cow position: chr21:4998685-4998441 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 133, 39

Conread position: 351-596
Cow position: chr21:34565409-34565161 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 103, 25

Conread position: 352-566
Cow position: chr21:31253340-31253565 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 64, 0

Conread position: 353-590
Cow position: chr21:9353246-9353488 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 100, 21

Conread position: 355-600
Cow position: chr21:20426339-20426582 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 10, 33

Conread position: 357-588
Cow position: chr21:18494776-18495014 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 94, 19

Conread position: 359-594
Cow position: chr21:40589671-40589438 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 108, 17

Conread position: 365-526
Cow position: chr21:34237212-34237368 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 373-593
Cow position: chr21:25800233-25800444 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 141, 16

Conread position: 375-594
Cow position: chr21:49662290-49662075 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 49, 0

Conread position: 402-576
Cow position: chr21:29978907-29978729 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 63, 6

Conread position: 408-584
Cow position: chr21:957527-957711 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 410-594
Cow position: chr21:12462109-12461921 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 428-594
Cow position: chr21:2412640-2412810 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 162

Conread position: 444-585
Cow position: chr21:4568181-4568325 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 72, 0

Show alignments to all cow chromosomes.