Cow genome map
| Conread name: | Ova1-OVRM10218A03 |
| Conread position: | 203-499 |
| Cow position: | chr23:18797096-18796797 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 141, 53 |
| Conread position: | 206-520 |
| Cow position: | chr23:18371303-18371008 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 206-586 |
| Cow position: | chr23:20389052-20388671 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 161 |
| Conread position: | 206-601 |
| Cow position: | chr23:6593106-6592708 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 57, 45 |
| Conread position: | 207-566 |
| Cow position: | chr23:32961772-32961406 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 209-506 |
| Cow position: | chr23:9725638-9725328 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 148 |
| Conread position: | 214-600 |
| Cow position: | chr23:29271716-29272106 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 215-576 |
| Cow position: | chr23:15710465-15710103 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 115 |
| Conread position: | 215-590 |
| Cow position: | chr23:36309029-36309403 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 76, 50 |
| Conread position: | 228-495 |
| Cow position: | chr23:2802680-2802407 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 210 |
| Conread position: | 234-600 |
| Cow position: | chr23:14126194-14126561 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 98 |
| Conread position: | 249-563 |
| Cow position: | chr23:11404614-11404299 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 201, 70 |
| Conread position: | 256-555 |
| Cow position: | chr23:4579378-4579091 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 170, 90 |
| Conread position: | 257-558 |
| Cow position: | chr23:40526312-40526023 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 193, 73 |
| Conread position: | 257-572 |
| Cow position: | chr23:1337654-1337335 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 87 |
| Conread position: | 257-586 |
| Cow position: | chr23:38455525-38455199 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 197, 89 |
| Conread position: | 257-599 |
| Cow position: | chr23:11434607-11434267 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 92 |
| Conread position: | 259-590 |
| Cow position: | chr23:14164742-14164418 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 259, 85 |
| Conread position: | 261-524 |
| Cow position: | chr23:16170361-16170607 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 261-526 |
| Cow position: | chr23:8063191-8063473 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 161 |
| Conread position: | 261-553 |
| Cow position: | chr23:3394842-3394549 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 75, 120 |
| Conread position: | 261-568 |
| Cow position: | chr23:9711939-9711621 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 96, 117 |
| Conread position: | 261-570 |
| Cow position: | chr23:361247-360952 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 257, 75 |
| Conread position: | 261-570 |
| Cow position: | chr23:5402583-5402256 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 261-583 |
| Cow position: | chr23:13511400-13511711 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 193, 57 |
| Conread position: | 261-584 |
| Cow position: | chr23:1398370-1398058 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 234, 55 |
| Conread position: | 261-586 |
| Cow position: | chr23:5162091-5162406 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 115, 64 |
| Conread position: | 261-596 |
| Cow position: | chr23:31607508-31607163 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 319 |
| Conread position: | 261-599 |
| Cow position: | chr23:19636599-19636268 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 69 |
| Conread position: | 261-600 |
| Cow position: | chr23:16058263-16058586 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 63 |
| Conread position: | 262-526 |
| Cow position: | chr23:21630880-21631144 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 32, 168 |
| Conread position: | 262-538 |
| Cow position: | chr23:12896942-12896671 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 238, 63 |
| Conread position: | 262-581 |
| Cow position: | chr23:7392618-7392318 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 262-582 |
| Cow position: | chr23:9734084-9734390 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 235, 82 |
| Conread position: | 262-583 |
| Cow position: | chr23:38208354-38208702 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 262-590 |
| Cow position: | chr23:7175288-7175598 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 236, 60 |
| Conread position: | 267-583 |
| Cow position: | chr23:11380608-11380277 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 78, 116 |
| Conread position: | 267-592 |
| Cow position: | chr23:26986610-26986284 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 183, 77 |
| Conread position: | 270-596 |
| Cow position: | chr23:20752686-20753003 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 54 |
| Conread position: | 274-506 |
| Cow position: | chr23:26003741-26003960 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 274-511 |
| Cow position: | chr23:1905705-1905932 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 170, 68 |
| Conread position: | 274-596 |
| Cow position: | chr23:23470628-23470925 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 236, 42 |
| Conread position: | 275-500 |
| Cow position: | chr23:11209669-11209901 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 108 |
| Conread position: | 276-554 |
| Cow position: | chr23:39309435-39309167 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 219, 46 |
| Conread position: | 279-588 |
| Cow position: | chr23:21445789-21446101 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 138 |
| Conread position: | 280-497 |
| Cow position: | chr23:29708560-29708340 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 283-497 |
| Cow position: | chr23:5151665-5151879 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 154, 61 |
| Conread position: | 300-586 |
| Cow position: | chr23:27862031-27862309 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 204, 31 |
| Conread position: | 303-573 |
| Cow position: | chr23:1647325-1647585 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 212, 53 |
| Conread position: | 314-583 |
| Cow position: | chr23:38855027-38854759 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 203, 32 |
| Conread position: | 326-584 |
| Cow position: | chr23:19979230-19978972 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 128, 5 |
| Conread position: | 331-567 |
| Cow position: | chr23:792308-792071 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 89, 13 |
| Conread position: | 331-584 |
| Cow position: | chr23:36199015-36199268 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 116, 46 |
| Conread position: | 331-588 |
| Cow position: | chr23:25358453-25358711 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 331-594 |
| Cow position: | chr23:19538272-19538009 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 331-594 |
| Cow position: | chr23:20781544-20781807 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 334-598 |
| Cow position: | chr23:5389425-5389690 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 12, 138 |
| Conread position: | 338-600 |
| Cow position: | chr23:37065568-37065840 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 339-601 |
| Cow position: | chr23:16237528-16237257 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 101, 17 |
| Conread position: | 346-567 |
| Cow position: | chr23:186908-187138 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 346-578 |
| Cow position: | chr23:31601721-31601482 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 31 |
| Conread position: | 346-588 |
| Cow position: | chr23:37190841-37190605 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 34, 102 |
| Conread position: | 347-594 |
| Cow position: | chr23:10014283-10014525 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 172, 29 |
| Conread position: | 354-556 |
| Cow position: | chr23:26632545-26632752 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 355-564 |
| Cow position: | chr23:4810496-4810711 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 145, 34 |
| Conread position: | 355-594 |
| Cow position: | chr23:20171324-20171564 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 99, 17 |
| Conread position: | 362-591 |
| Cow position: | chr23:13359573-13359797 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 365-591 |
| Cow position: | chr23:15872945-15872710 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 11 |
| Conread position: | 365-600 |
| Cow position: | chr23:40862095-40862337 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 374-594 |
| Cow position: | chr23:24704039-24704269 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 375-573 |
| Cow position: | chr23:25378421-25378621 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 126, 14 |
| Conread position: | 376-591 |
| Cow position: | chr23:11080847-11081059 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 125, 68 |
| Conread position: | 377-600 |
| Cow position: | chr23:25407685-25407456 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 83, 215 |
| Conread position: | 379-593 |
| Cow position: | chr23:40891130-40891346 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 139, 105 |
| Conread position: | 379-594 |
| Cow position: | chr23:21659707-21659931 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 379-594 |
| Cow position: | chr23:30307677-30307894 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 396-600 |
| Cow position: | chr23:32662361-32662571 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 398-577 |
| Cow position: | chr23:18296595-18296779 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 412-599 |
| Cow position: | chr23:35177120-35177310 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 110 |
| Conread position: | 420-585 |
| Cow position: | chr23:30773869-30773699 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 426-577 |
| Cow position: | chr23:40651646-40651493 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 75, 92 |
Show alignments to all cow chromosomes.