Cow genome map
| Conread name: | Ova1-OVRM10218A03 |
| Conread position: | 205-593 |
| Cow position: | chr25:20496139-20496518 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 95 |
| Conread position: | 217-600 |
| Cow position: | chr25:24136834-24136447 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 120 |
| Conread position: | 232-600 |
| Cow position: | chr25:29215780-29215401 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 157 |
| Conread position: | 261-538 |
| Cow position: | chr25:9642004-9642283 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 199, 106 |
| Conread position: | 261-558 |
| Cow position: | chr25:26757091-26757384 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 206, 68 |
| Conread position: | 261-577 |
| Cow position: | chr25:4002434-4002767 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 261-583 |
| Cow position: | chr25:24227680-24227366 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 192, 77 |
| Conread position: | 261-584 |
| Cow position: | chr25:20007781-20008109 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 122 |
| Conread position: | 261-587 |
| Cow position: | chr25:6891867-6891548 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 66 |
| Conread position: | 261-594 |
| Cow position: | chr25:11585173-11585498 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 186, 20 |
| Conread position: | 261-594 |
| Cow position: | chr25:12824369-12824037 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 68, 117 |
| Conread position: | 261-594 |
| Cow position: | chr25:25827121-25827451 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 186, 83 |
| Conread position: | 261-600 |
| Cow position: | chr25:18000867-18000540 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 71, 110 |
| Conread position: | 261-600 |
| Cow position: | chr25:26654568-26654897 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 183, 12 |
| Conread position: | 262-521 |
| Cow position: | chr25:10657376-10657113 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 79, 104 |
| Conread position: | 262-526 |
| Cow position: | chr25:37469439-37469686 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 262-583 |
| Cow position: | chr25:395018-395325 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 61 |
| Conread position: | 262-594 |
| Cow position: | chr25:40957325-40957004 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 254, 83 |
| Conread position: | 262-599 |
| Cow position: | chr25:20625268-20624946 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 200, 62 |
| Conread position: | 263-591 |
| Cow position: | chr25:12239474-12239166 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 255, 17 |
| Conread position: | 267-594 |
| Cow position: | chr25:9957368-9957057 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 234, 79 |
| Conread position: | 270-498 |
| Cow position: | chr25:7445822-7446036 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 57 |
| Conread position: | 272-576 |
| Cow position: | chr25:40321636-40321332 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 72, 19 |
| Conread position: | 274-591 |
| Cow position: | chr25:36037117-36036802 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 244, 45 |
| Conread position: | 300-599 |
| Cow position: | chr25:22735803-22736104 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 152 |
| Conread position: | 300-600 |
| Cow position: | chr25:8576390-8576676 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 308-541 |
| Cow position: | chr25:10746600-10746828 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 206, 44 |
| Conread position: | 308-549 |
| Cow position: | chr25:17702264-17702032 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 208, 16 |
| Conread position: | 319-464 |
| Cow position: | chr25:8961167-8961313 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 333-469 |
| Cow position: | chr25:37006964-37006829 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 334-510 |
| Cow position: | chr25:9842720-9842900 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 12, 83 |
| Conread position: | 340-586 |
| Cow position: | chr25:28188220-28187969 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 110, 5 |
| Conread position: | 341-578 |
| Cow position: | chr25:31733006-31732766 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 345-593 |
| Cow position: | chr25:6424853-6424604 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 109, 41 |
| Conread position: | 346-566 |
| Cow position: | chr25:5514740-5514966 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 108, 30 |
| Conread position: | 346-577 |
| Cow position: | chr25:22203957-22203722 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 346-577 |
| Cow position: | chr25:27504452-27504211 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 346-578 |
| Cow position: | chr25:36081608-36081844 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 346-583 |
| Cow position: | chr25:12195592-12195356 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 174, 29 |
| Conread position: | 346-587 |
| Cow position: | chr25:8512358-8512114 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 108, 43 |
| Conread position: | 347-499 |
| Cow position: | chr25:9625541-9625698 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 347-588 |
| Cow position: | chr25:20060297-20060051 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 348-594 |
| Cow position: | chr25:36535697-36535453 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 151, 34 |
| Conread position: | 350-584 |
| Cow position: | chr25:12778797-12778561 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 34, 177 |
| Conread position: | 351-594 |
| Cow position: | chr25:22575780-22575539 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 353-594 |
| Cow position: | chr25:20076234-20076477 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 353-595 |
| Cow position: | chr25:15286800-15286561 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 106, 15 |
| Conread position: | 353-600 |
| Cow position: | chr25:24406000-24405747 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 355-573 |
| Cow position: | chr25:16400507-16400300 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 146, 6 |
| Conread position: | 355-586 |
| Cow position: | chr25:16001779-16001550 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 163, 106 |
| Conread position: | 360-581 |
| Cow position: | chr25:14467335-14467109 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 90, 26 |
| Conread position: | 365-538 |
| Cow position: | chr25:33260492-33260665 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 136, 7 |
| Conread position: | 375-600 |
| Cow position: | chr25:8560630-8560855 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 141, 40 |
| Conread position: | 384-583 |
| Cow position: | chr25:29312572-29312369 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 17 |
| Conread position: | 384-594 |
| Cow position: | chr25:17365487-17365278 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 132, 48 |
| Conread position: | 401-600 |
| Cow position: | chr25:33245720-33245909 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 450-594 |
| Cow position: | chr25:33142070-33141923 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 120, 0 |
Show alignments to all cow chromosomes.