Cow genome map
| Conread name: | Ova1-OVRM10218A03 |
| Conread position: | 208-486 |
| Cow position: | chr27:13977048-13977314 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 153, 36 |
| Conread position: | 208-584 |
| Cow position: | chr27:9090449-9090823 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 215-573 |
| Cow position: | chr27:24445809-24446163 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 30, 123 |
| Conread position: | 216-586 |
| Cow position: | chr27:25471503-25471120 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 216-590 |
| Cow position: | chr27:20765607-20765981 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 54 |
| Conread position: | 254-594 |
| Cow position: | chr27:8430126-8430467 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 131 |
| Conread position: | 256-593 |
| Cow position: | chr27:25292464-25292133 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 257-586 |
| Cow position: | chr27:4385767-4386082 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 261, 85 |
| Conread position: | 257-596 |
| Cow position: | chr27:12231610-12231942 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 261-490 |
| Cow position: | chr27:4295119-4295350 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 261-511 |
| Cow position: | chr27:12282559-12282809 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 206 |
| Conread position: | 261-583 |
| Cow position: | chr27:30561210-30560895 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 261, 70 |
| Conread position: | 261-584 |
| Cow position: | chr27:11255807-11255501 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 233, 80 |
| Conread position: | 261-590 |
| Cow position: | chr27:27867391-27867714 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 189, 85 |
| Conread position: | 261-594 |
| Cow position: | chr27:4664766-4664452 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 261-600 |
| Cow position: | chr27:6454507-6454176 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 81 |
| Conread position: | 261-601 |
| Cow position: | chr27:491181-490861 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 262-579 |
| Cow position: | chr27:1903356-1903049 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 194, 60 |
| Conread position: | 262-582 |
| Cow position: | chr27:30374261-30374590 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 119 |
| Conread position: | 262-590 |
| Cow position: | chr27:1353888-1353562 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 216, 110 |
| Conread position: | 263-594 |
| Cow position: | chr27:22418475-22418796 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 191, 68 |
| Conread position: | 274-571 |
| Cow position: | chr27:25411234-25411526 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 244, 70 |
| Conread position: | 274-585 |
| Cow position: | chr27:26581165-26581457 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 240, 57 |
| Conread position: | 274-594 |
| Cow position: | chr27:18558660-18558331 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 277-590 |
| Cow position: | chr27:21139103-21138797 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 111, 22 |
| Conread position: | 331-589 |
| Cow position: | chr27:13638756-13639017 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 46 |
| Conread position: | 334-583 |
| Cow position: | chr27:29038707-29038957 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 337-566 |
| Cow position: | chr27:27040840-27040604 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 11, 190 |
| Conread position: | 340-562 |
| Cow position: | chr27:19718146-19717927 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 9 |
| Conread position: | 341-592 |
| Cow position: | chr27:22220778-22220530 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 112, 13 |
| Conread position: | 342-585 |
| Cow position: | chr27:8291785-8292025 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 345-586 |
| Cow position: | chr27:26935696-26935929 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 345-594 |
| Cow position: | chr27:2592763-2592517 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 155, 31 |
| Conread position: | 345-594 |
| Cow position: | chr27:6620368-6620115 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 107, 31 |
| Conread position: | 346-566 |
| Cow position: | chr27:26398038-26398259 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 126, 30 |
| Conread position: | 346-576 |
| Cow position: | chr27:8048518-8048753 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 106, 30 |
| Conread position: | 346-576 |
| Cow position: | chr27:27843771-27844006 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 95, 30 |
| Conread position: | 346-583 |
| Cow position: | chr27:26508940-26509179 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 121, 25 |
| Conread position: | 346-584 |
| Cow position: | chr27:26440837-26441081 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 346-584 |
| Cow position: | chr27:28921675-28921917 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 106, 39 |
| Conread position: | 346-599 |
| Cow position: | chr27:27049691-27049942 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 347-589 |
| Cow position: | chr27:11081416-11081170 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 153, 38 |
| Conread position: | 347-594 |
| Cow position: | chr27:23930184-23929949 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 172, 25 |
| Conread position: | 353-594 |
| Cow position: | chr27:18544212-18543966 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 152, 23 |
| Conread position: | 355-577 |
| Cow position: | chr27:26300051-26299825 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 112, 21 |
| Conread position: | 361-583 |
| Cow position: | chr27:30915207-30914989 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 364-583 |
| Cow position: | chr27:27003078-27003292 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 150, 12 |
| Conread position: | 365-582 |
| Cow position: | chr27:20354782-20354568 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 153, 11 |
| Conread position: | 375-593 |
| Cow position: | chr27:23659147-23659364 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 135, 83 |
| Conread position: | 377-570 |
| Cow position: | chr27:6038782-6038591 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 139, 38 |
| Conread position: | 377-594 |
| Cow position: | chr27:6037314-6037094 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 124, 95 |
| Conread position: | 378-600 |
| Cow position: | chr27:14937238-14937462 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 132, 78 |
| Conread position: | 396-586 |
| Cow position: | chr27:27550575-27550762 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 122, 70 |
| Conread position: | 396-600 |
| Cow position: | chr27:6160154-6159948 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 405-573 |
| Cow position: | chr27:23662441-23662616 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 420-599 |
| Cow position: | chr27:19601525-19601348 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 83, 109 |
| Conread position: | 421-601 |
| Cow position: | chr27:29679175-29679359 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 182 |
| Conread position: | 424-595 |
| Cow position: | chr27:12243991-12244154 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 428-573 |
| Cow position: | chr27:18948450-18948604 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 441-582 |
| Cow position: | chr27:14874766-14874620 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.