Cow genome map
| Conread name: | Ova1-OVRM10218A03 |
| Conread position: | 202-600 |
| Cow position: | chr28:13693349-13693748 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 149 |
| Conread position: | 207-582 |
| Cow position: | chr28:19295753-19295381 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 215-601 |
| Cow position: | chr28:32300751-32300360 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 136 |
| Conread position: | 216-601 |
| Cow position: | chr28:20264994-20265395 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 158 |
| Conread position: | 217-586 |
| Cow position: | chr28:10642399-10642035 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 231-600 |
| Cow position: | chr28:3770038-3769671 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 106 |
| Conread position: | 249-594 |
| Cow position: | chr28:5931001-5931343 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 251-508 |
| Cow position: | chr28:22500827-22500587 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 256-573 |
| Cow position: | chr28:11380399-11380073 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 126 |
| Conread position: | 256-601 |
| Cow position: | chr28:25563741-25564079 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 63 |
| Conread position: | 261-512 |
| Cow position: | chr28:5805187-5805423 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 261-521 |
| Cow position: | chr28:8372139-8372389 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 189, 60 |
| Conread position: | 261-524 |
| Cow position: | chr28:3479933-3480193 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 234, 61 |
| Conread position: | 261-526 |
| Cow position: | chr28:11690537-11690276 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 192, 63 |
| Conread position: | 261-526 |
| Cow position: | chr28:11759869-11759619 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 260, 81 |
| Conread position: | 261-572 |
| Cow position: | chr28:29074102-29073784 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 79, 110 |
| Conread position: | 261-573 |
| Cow position: | chr28:7549394-7549090 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 193, 81 |
| Conread position: | 261-583 |
| Cow position: | chr28:6051383-6051713 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 69, 119 |
| Conread position: | 261-586 |
| Cow position: | chr28:11047244-11047574 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 261-588 |
| Cow position: | chr28:12049045-12048721 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 81, 117 |
| Conread position: | 261-590 |
| Cow position: | chr28:3914378-3914698 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 215, 81 |
| Conread position: | 261-591 |
| Cow position: | chr28:21354892-21355211 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 182, 78 |
| Conread position: | 261-594 |
| Cow position: | chr28:18139788-18139469 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 261-594 |
| Cow position: | chr28:21598585-21598265 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 204, 81 |
| Conread position: | 262-555 |
| Cow position: | chr28:23793650-23793355 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 241 |
| Conread position: | 262-594 |
| Cow position: | chr28:20312943-20313264 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 53, 81 |
| Conread position: | 263-507 |
| Cow position: | chr28:11924150-11923912 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 263-524 |
| Cow position: | chr28:10514435-10514175 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 86, 115 |
| Conread position: | 273-577 |
| Cow position: | chr28:13725841-13726133 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 174, 58 |
| Conread position: | 274-512 |
| Cow position: | chr28:5366464-5366222 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 90, 125 |
| Conread position: | 274-526 |
| Cow position: | chr28:11827167-11827416 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 221, 70 |
| Conread position: | 331-577 |
| Cow position: | chr28:23459864-23460123 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 242 |
| Conread position: | 332-590 |
| Cow position: | chr28:7865054-7865310 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 336-600 |
| Cow position: | chr28:19026272-19026012 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 182, 39 |
| Conread position: | 337-587 |
| Cow position: | chr28:16244027-16243773 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 106, 39 |
| Conread position: | 338-577 |
| Cow position: | chr28:30978015-30978247 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 338-588 |
| Cow position: | chr28:27218052-27218308 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 39 |
| Conread position: | 339-587 |
| Cow position: | chr28:23410589-23410341 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 165, 9 |
| Conread position: | 342-576 |
| Cow position: | chr28:26103452-26103681 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 34 |
| Conread position: | 342-601 |
| Cow position: | chr28:34199361-34199112 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 118, 83 |
| Conread position: | 343-566 |
| Cow position: | chr28:26269067-26269292 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 343-583 |
| Cow position: | chr28:29455919-29455677 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 33 |
| Conread position: | 345-587 |
| Cow position: | chr28:15007901-15008145 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 124 |
| Conread position: | 345-594 |
| Cow position: | chr28:23007988-23007743 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 104 |
| Conread position: | 346-497 |
| Cow position: | chr28:12938741-12938891 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 346-573 |
| Cow position: | chr28:21380622-21380848 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 346-577 |
| Cow position: | chr28:9851374-9851591 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 346-585 |
| Cow position: | chr28:11426804-11426561 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 106, 30 |
| Conread position: | 346-586 |
| Cow position: | chr28:14150975-14151214 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 152, 31 |
| Conread position: | 346-591 |
| Cow position: | chr28:23621289-23621530 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 346-595 |
| Cow position: | chr28:7512851-7512596 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 108, 39 |
| Conread position: | 346-600 |
| Cow position: | chr28:12942126-12942375 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 164, 30 |
| Conread position: | 348-594 |
| Cow position: | chr28:2814756-2814517 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 350-508 |
| Cow position: | chr28:22439964-22440126 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 353-566 |
| Cow position: | chr28:26719108-26719313 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 161, 23 |
| Conread position: | 353-572 |
| Cow position: | chr28:27659948-27659711 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 98, 180 |
| Conread position: | 353-573 |
| Cow position: | chr28:13607633-13607855 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 147 |
| Conread position: | 353-589 |
| Cow position: | chr28:4057734-4057967 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 165, 32 |
| Conread position: | 353-596 |
| Cow position: | chr28:17153530-17153762 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 115, 29 |
| Conread position: | 353-600 |
| Cow position: | chr28:34878225-34877974 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 124, 23 |
| Conread position: | 356-570 |
| Cow position: | chr28:2898746-2898965 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 145, 20 |
| Conread position: | 357-588 |
| Cow position: | chr28:28414422-28414658 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 357-595 |
| Cow position: | chr28:13474058-13474290 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 161, 19 |
| Conread position: | 373-599 |
| Cow position: | chr28:4098612-4098822 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 377-600 |
| Cow position: | chr28:34082251-34082020 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 106 |
| Conread position: | 379-583 |
| Cow position: | chr28:17625364-17625152 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 379-598 |
| Cow position: | chr28:12047127-12046922 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 398-561 |
| Cow position: | chr28:10035192-10035357 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 112, 31 |
| Conread position: | 408-573 |
| Cow position: | chr28:14512327-14512491 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 106, 38 |
| Conread position: | 410-589 |
| Cow position: | chr28:21569991-21570172 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 452-599 |
| Cow position: | chr28:33285267-33285118 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.