Cow genome map
| Conread name: | Ova1-OVRM10218A03 |
| Conread position: | 204-577 |
| Cow position: | chr29:24952286-24952655 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 206-586 |
| Cow position: | chr29:94967-94579 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 223-594 |
| Cow position: | chr29:18338922-18338559 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 231-590 |
| Cow position: | chr29:21535060-21534697 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 243-594 |
| Cow position: | chr29:9686362-9686019 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 275, 11 |
| Conread position: | 255-503 |
| Cow position: | chr29:23569225-23568982 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 256-524 |
| Cow position: | chr29:4058169-4058423 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 197, 88 |
| Conread position: | 261-499 |
| Cow position: | chr29:12956659-12956424 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 261-508 |
| Cow position: | chr29:2367142-2366883 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 261-513 |
| Cow position: | chr29:18085236-18085493 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 72, 64 |
| Conread position: | 261-528 |
| Cow position: | chr29:133851-134113 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 193, 63 |
| Conread position: | 261-549 |
| Cow position: | chr29:1933899-1933615 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 233, 64 |
| Conread position: | 261-570 |
| Cow position: | chr29:2481671-2481380 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 261-573 |
| Cow position: | chr29:18521384-18521059 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 95, 151 |
| Conread position: | 261-573 |
| Cow position: | chr29:39567347-39567650 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 257, 83 |
| Conread position: | 261-576 |
| Cow position: | chr29:23874118-23874423 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 117, 49 |
| Conread position: | 261-577 |
| Cow position: | chr29:11398266-11397957 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 95 |
| Conread position: | 261-582 |
| Cow position: | chr29:31926629-31926317 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 204, 70 |
| Conread position: | 261-588 |
| Cow position: | chr29:32963201-32963534 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 261-590 |
| Cow position: | chr29:19338621-19338968 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 59, 121 |
| Conread position: | 261-594 |
| Cow position: | chr29:649929-650262 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 83 |
| Conread position: | 261-594 |
| Cow position: | chr29:15940977-15940650 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 162, 81 |
| Conread position: | 261-601 |
| Cow position: | chr29:2589238-2588903 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 61, 96 |
| Conread position: | 262-508 |
| Cow position: | chr29:7051596-7051853 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 262-591 |
| Cow position: | chr29:40656350-40656677 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 188, 72 |
| Conread position: | 262-592 |
| Cow position: | chr29:40117233-40117554 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 191, 61 |
| Conread position: | 263-571 |
| Cow position: | chr29:24623905-24624207 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 190, 11 |
| Conread position: | 263-591 |
| Cow position: | chr29:32290265-32290589 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 64 |
| Conread position: | 263-599 |
| Cow position: | chr29:9911825-9912161 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 267-592 |
| Cow position: | chr29:26616069-26615738 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 97, 68 |
| Conread position: | 274-533 |
| Cow position: | chr29:20178456-20178202 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 193, 66 |
| Conread position: | 274-594 |
| Cow position: | chr29:32655766-32655449 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 82, 102 |
| Conread position: | 274-600 |
| Cow position: | chr29:12901430-12901118 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 173, 59 |
| Conread position: | 275-578 |
| Cow position: | chr29:40337853-40337561 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 70 |
| Conread position: | 302-594 |
| Cow position: | chr29:11634502-11634804 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 20, 84 |
| Conread position: | 302-600 |
| Cow position: | chr29:603608-603331 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 325-591 |
| Cow position: | chr29:29769632-29769370 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 193, 20 |
| Conread position: | 325-594 |
| Cow position: | chr29:2984603-2984871 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 180, 7 |
| Conread position: | 331-584 |
| Cow position: | chr29:477826-478079 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 119, 36 |
| Conread position: | 333-566 |
| Cow position: | chr29:4065809-4066042 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 338-587 |
| Cow position: | chr29:12451097-12451354 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 338-596 |
| Cow position: | chr29:24197907-24197660 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 10, 119 |
| Conread position: | 343-586 |
| Cow position: | chr29:35434601-35434842 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 107, 34 |
| Conread position: | 343-591 |
| Cow position: | chr29:16657422-16657671 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 111, 33 |
| Conread position: | 345-578 |
| Cow position: | chr29:11071971-11071730 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 95, 31 |
| Conread position: | 346-573 |
| Cow position: | chr29:45650608-45650380 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 155, 30 |
| Conread position: | 346-582 |
| Cow position: | chr29:87283-87045 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 108, 40 |
| Conread position: | 346-586 |
| Cow position: | chr29:35281237-35281473 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 149, 43 |
| Conread position: | 346-589 |
| Cow position: | chr29:26130517-26130761 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 134, 31 |
| Conread position: | 346-591 |
| Cow position: | chr29:14501328-14501570 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 346-594 |
| Cow position: | chr29:3395844-3396088 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 172, 40 |
| Conread position: | 346-595 |
| Cow position: | chr29:26771175-26771419 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 172, 30 |
| Conread position: | 347-577 |
| Cow position: | chr29:28868366-28868603 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 102, 208 |
| Conread position: | 348-564 |
| Cow position: | chr29:42939617-42939405 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 348-579 |
| Cow position: | chr29:11365983-11366206 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 197, 19 |
| Conread position: | 348-590 |
| Cow position: | chr29:7408153-7407907 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 104, 28 |
| Conread position: | 349-591 |
| Cow position: | chr29:4194384-4194133 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 105, 23 |
| Conread position: | 353-572 |
| Cow position: | chr29:36404562-36404784 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 165, 32 |
| Conread position: | 353-573 |
| Cow position: | chr29:13372404-13372628 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 101, 32 |
| Conread position: | 353-586 |
| Cow position: | chr29:26129240-26129477 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 100, 23 |
| Conread position: | 353-589 |
| Cow position: | chr29:19389227-19389466 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 143, 32 |
| Conread position: | 353-599 |
| Cow position: | chr29:23743296-23743067 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 354-578 |
| Cow position: | chr29:9139150-9139381 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 20 |
| Conread position: | 358-596 |
| Cow position: | chr29:13553878-13554123 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 375-590 |
| Cow position: | chr29:6472077-6472295 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 198 |
| Conread position: | 375-599 |
| Cow position: | chr29:11787554-11787785 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 375-600 |
| Cow position: | chr29:39023576-39023361 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 377-586 |
| Cow position: | chr29:36183039-36183256 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 90, 49 |
| Conread position: | 380-577 |
| Cow position: | chr29:44135698-44135493 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 125 |
| Conread position: | 380-579 |
| Cow position: | chr29:19254056-19253852 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 120, 201 |
| Conread position: | 385-577 |
| Cow position: | chr29:19821068-19821254 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 133, 41 |
| Conread position: | 400-577 |
| Cow position: | chr29:22778395-22778210 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 404-590 |
| Cow position: | chr29:709332-709140 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 410-576 |
| Cow position: | chr29:41364906-41365078 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 413-590 |
| Cow position: | chr29:10153990-10153808 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 439-594 |
| Cow position: | chr29:7392925-7393083 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 147 |
| Conread position: | 441-592 |
| Cow position: | chr29:44682269-44682114 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.