Cow genome map

Conread name: Ova1-OVRM10225D07

Conread position: 1-690
Cow position: chr27:24296474-24295763 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 156

Conread position: 4-175
Cow position: chr27:24260900-24260714 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 4-182
Cow position: chr27:3991799-3991981 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 20, 155

Conread position: 4-205
Cow position: chr27:9332540-9332746 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 18, 158

Conread position: 4-221
Cow position: chr27:15034301-15034080 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 157

Conread position: 4-231
Cow position: chr27:773568-773799 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 16, 156

Conread position: 4-236
Cow position: chr27:18697134-18697370 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 16, 152

Conread position: 4-257
Cow position: chr27:26599722-26599963 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 16, 77

Conread position: 4-354
Cow position: chr27:13900687-13901040 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 156

Conread position: 4-354
Cow position: chr27:22648113-22647760 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 156

Conread position: 4-356
Cow position: chr27:10378980-10379334 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 152

Conread position: 4-362
Cow position: chr27:30035607-30035974 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 148

Conread position: 4-374
Cow position: chr27:12146850-12146477 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 156

Conread position: 4-444
Cow position: chr27:24572007-24571568 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 301
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 67

Conread position: 4-449
Cow position: chr27:30571626-30572063 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 92

Conread position: 4-461
Cow position: chr27:3759666-3760126 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 132

Conread position: 4-507
Cow position: chr27:12749826-12750325 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 156

Conread position: 4-532
Cow position: chr27:15543808-15544346 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 156

Conread position: 4-533
Cow position: chr27:27665794-27666341 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 156

Conread position: 4-655
Cow position: chr27:19523919-19523253 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 165

Conread position: 4-672
Cow position: chr27:8972240-8972917 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 111

Conread position: 4-672
Cow position: chr27:21451236-21451916 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 163

Conread position: 4-672
Cow position: chr27:25965163-25964491 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 152

Conread position: 4-672
Cow position: chr27:27291187-27291866 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 108

Conread position: 4-679
Cow position: chr27:15405442-15406101 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 148

Conread position: 4-682
Cow position: chr27:1535977-1536650 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 78

Conread position: 4-682
Cow position: chr27:16427472-16428135 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 95

Conread position: 4-684
Cow position: chr27:8426655-8427338 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 77

Conread position: 4-686
Cow position: chr27:5913734-5914415 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 48

Conread position: 4-687
Cow position: chr27:2000636-2001339 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 158

Conread position: 4-687
Cow position: chr27:31268022-31268695 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 78

Conread position: 4-690
Cow position: chr27:3232738-3232041 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 158

Conread position: 4-690
Cow position: chr27:4331947-4331242 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 154

Conread position: 4-690
Cow position: chr27:4982165-4982860 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 151

Conread position: 4-690
Cow position: chr27:15634539-15633846 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 51

Conread position: 4-690
Cow position: chr27:20810207-20810913 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 163

Conread position: 4-691
Cow position: chr27:166126-165422 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 141

Conread position: 4-691
Cow position: chr27:1082370-1081674 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 149

Conread position: 4-691
Cow position: chr27:1520473-1521172 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 156

Conread position: 4-691
Cow position: chr27:5984238-5983532 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 153

Conread position: 4-691
Cow position: chr27:15273280-15272576 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 157

Conread position: 4-691
Cow position: chr27:25801412-25800713 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 156

Conread position: 4-691
Cow position: chr27:29036577-29035884 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 157

Conread position: 5-277
Cow position: chr27:22742620-22742345 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 20, 160

Conread position: 5-559
Cow position: chr27:9990414-9989844 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 93

Conread position: 5-643
Cow position: chr27:27044977-27045618 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 152

Conread position: 5-644
Cow position: chr27:23318128-23317507 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 93

Conread position: 5-653
Cow position: chr27:17567894-17568549 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 154

Conread position: 5-672
Cow position: chr27:26855863-26856513 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 49

Conread position: 5-691
Cow position: chr27:8960235-8959519 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 155

Conread position: 5-691
Cow position: chr27:14297010-14297705 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 162

Conread position: 5-691
Cow position: chr27:16031603-16030899 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 154

Conread position: 6-691
Cow position: chr27:10578741-10579441 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 154

Conread position: 7-691
Cow position: chr27:27193561-27192851 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 39

Conread position: 10-356
Cow position: chr27:16788642-16788284 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 209

Conread position: 10-672
Cow position: chr27:27729686-27729018 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 148

Conread position: 13-437
Cow position: chr27:17422398-17422814 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 134

Conread position: 16-447
Cow position: chr27:27235297-27234864 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 146

Conread position: 16-685
Cow position: chr27:5925081-5925749 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 141

Conread position: 21-281
Cow position: chr27:22723171-22723428 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 81, 98

Conread position: 21-608
Cow position: chr27:25971786-25971192 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 72

Conread position: 23-243
Cow position: chr27:22329030-22329250 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 81, 132

Conread position: 24-324
Cow position: chr27:29447259-29446960 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 132

Conread position: 25-691
Cow position: chr27:26784640-26785313 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 131

Conread position: 30-217
Cow position: chr27:20716718-20716904 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 16

Conread position: 30-690
Cow position: chr27:29811159-29811801 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 34

Conread position: 31-216
Cow position: chr27:8261675-8261858 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 74, 46

Conread position: 35-691
Cow position: chr27:13353138-13353804 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 113

Conread position: 42-690
Cow position: chr27:26329768-26330429 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 109

Conread position: 46-331
Cow position: chr27:23075106-23074827 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 193
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 58, 13

Conread position: 48-689
Cow position: chr27:31249090-31249727 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 32

Conread position: 52-351
Cow position: chr27:7911829-7912123 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 220
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 50, 5

Conread position: 52-684
Cow position: chr27:27556653-27557291 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 102

Conread position: 102-470
Cow position: chr27:27849169-27849533 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 55

Conread position: 102-672
Cow position: chr27:1188554-1189135 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 109

Conread position: 103-620
Cow position: chr27:13308544-13309064 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 54

Conread position: 103-676
Cow position: chr27:21284329-21283773 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 38

Conread position: 108-400
Cow position: chr27:21342434-21342721 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 44

Conread position: 109-691
Cow position: chr27:2558085-2557496 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 48

Conread position: 118-691
Cow position: chr27:11434091-11434664 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 36

Conread position: 120-360
Cow position: chr27:15926002-15925767 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 127-691
Cow position: chr27:22797732-22797161 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 9

Conread position: 128-690
Cow position: chr27:8200863-8201432 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 34

Conread position: 151-691
Cow position: chr27:3994360-3993838 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 52

Conread position: 156-381
Cow position: chr27:219851-219637 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 47, 0

Conread position: 157-435
Cow position: chr27:526147-525871 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 46

Conread position: 157-502
Cow position: chr27:4768386-4768730 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 46

Conread position: 166-689
Cow position: chr27:344963-344434 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 38

Conread position: 179-690
Cow position: chr27:19424405-19423881 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 25

Conread position: 181-672
Cow position: chr27:30307293-30306796 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 32

Conread position: 187-347
Cow position: chr27:2681302-2681459 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 190-685
Cow position: chr27:14380305-14380795 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 14

Conread position: 196-691
Cow position: chr27:12281688-12282185 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 8

Conread position: 203-691
Cow position: chr27:3653703-3653202 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 48

Conread position: 232-652
Cow position: chr27:22329521-22329943 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 61

Conread position: 552-691
Cow position: chr27:23454331-23454473 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 10, 30

Show alignments to all cow chromosomes.