Cow genome map

Conread name: OvaN-UMC-pnatal4-008-h10

Conread position: 1-173
Cow position: chr23:38248685-38248854 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 52, 106

Conread position: 1-177
Cow position: chr23:12408726-12408545 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 29

Conread position: 1-190
Cow position: chr23:406376-406195 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 172, 88

Conread position: 1-193
Cow position: chr23:25407667-25407468 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 57, 120

Conread position: 1-222
Cow position: chr23:37190789-37190581 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 1-229
Cow position: chr23:26632584-26632825 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 56, 133

Conread position: 1-230
Cow position: chr23:1068528-1068294 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 29

Conread position: 1-236
Cow position: chr23:20781609-20781850 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 57, 113

Conread position: 1-239
Cow position: chr23:7402491-7402732 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 112, 125

Conread position: 1-239
Cow position: chr23:10554227-10553978 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 59, 133

Conread position: 1-240
Cow position: chr23:3140649-3140888 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 57, 125

Conread position: 1-240
Cow position: chr23:3715550-3715793 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 59, 10

Conread position: 1-240
Cow position: chr23:16610025-16609774 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 1-254
Cow position: chr23:20752797-20753062 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 58, 0

Conread position: 1-259
Cow position: chr23:9595043-9594781 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 57, 14

Conread position: 1-261
Cow position: chr23:5603486-5603228 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 160, 95

Conread position: 1-270
Cow position: chr23:1924051-1923771 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 24, 34

Conread position: 1-270
Cow position: chr23:15742884-15743156 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 187
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 169, 40

Conread position: 1-270
Cow position: chr23:29345975-29345701 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 24, 33

Conread position: 1-273
Cow position: chr23:19636479-19636195 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 104

Conread position: 1-274
Cow position: chr23:39806657-39806940 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 193
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 51, 94

Conread position: 1-274
Cow position: chr23:40781111-40781400 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 29

Conread position: 1-275
Cow position: chr23:9734199-9734480 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 187
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 57, 130

Conread position: 1-275
Cow position: chr23:29459304-29459027 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 24, 33

Conread position: 1-279
Cow position: chr23:9711803-9711520 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 7

Conread position: 1-279
Cow position: chr23:25408620-25408907 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 57, 98

Conread position: 1-279
Cow position: chr23:32148551-32148278 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 53, 10

Conread position: 1-279
Cow position: chr23:36146670-36146394 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 201
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 57, 150

Conread position: 1-280
Cow position: chr23:2531555-2531272 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 195
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 171, 71

Conread position: 1-280
Cow position: chr23:19002284-19001992 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 57, 44

Conread position: 1-280
Cow position: chr23:40891146-40891439 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 33

Conread position: 1-290
Cow position: chr23:22588485-22588191 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 186

Conread position: 1-294
Cow position: chr23:7322013-7321723 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 201
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 57, 31

Conread position: 1-294
Cow position: chr23:38455400-38455088 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 216
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 57, 26

Conread position: 1-295
Cow position: chr23:9641633-9641342 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 208
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 50, 117

Conread position: 1-295
Cow position: chr23:40862124-40862437 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 57, 0

Conread position: 1-296
Cow position: chr23:30307693-30308000 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 57, 17

Conread position: 1-298
Cow position: chr23:10415241-10414929 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 216
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 56, 100

Conread position: 1-300
Cow position: chr23:8930325-8930041 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 68, 23

Conread position: 1-300
Cow position: chr23:14838951-14838648 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 201, 121

Conread position: 1-300
Cow position: chr23:16237475-16237160 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 243

Conread position: 1-300
Cow position: chr23:20585927-20585605 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 303

Conread position: 1-300
Cow position: chr23:22804508-22804821 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 210
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 68, 0

Conread position: 1-300
Cow position: chr23:31607374-31607058 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 1-300
Cow position: chr23:41590126-41589826 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 67, 130

Conread position: 1-304
Cow position: chr23:7550863-7550554 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 230
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 28, 78

Conread position: 1-322
Cow position: chr23:32662360-32662685 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 239
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 63, 254

Conread position: 1-363
Cow position: chr23:11564557-11564201 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 251
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 57, 30

Conread position: 1-363
Cow position: chr23:22660785-22660411 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 267
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 102, 50

Conread position: 1-363
Cow position: chr23:26066905-26067269 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 180, 29

Conread position: 1-363
Cow position: chr23:37224281-37223895 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 127

Conread position: 1-368
Cow position: chr23:16058384-16058765 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 68

Conread position: 2-226
Cow position: chr23:39028570-39028798 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 105, 122

Conread position: 2-264
Cow position: chr23:21452947-21452670 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 186
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 69, 125

Conread position: 2-295
Cow position: chr23:17000485-17000798 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 32, 219

Conread position: 2-300
Cow position: chr23:29271903-29272211 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 206
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 38, 116

Conread position: 2-300
Cow position: chr23:35362987-35362682 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 203
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 56, 124

Conread position: 2-301
Cow position: chr23:23470729-23471006 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 21

Conread position: 3-215
Cow position: chr23:3247375-3247588 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 44

Conread position: 3-238
Cow position: chr23:7845076-7845323 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 168
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 31

Conread position: 3-240
Cow position: chr23:14164613-14164366 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 3-274
Cow position: chr23:24704066-24704355 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 22, 31

Conread position: 3-279
Cow position: chr23:11434469-11434185 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 145

Conread position: 3-279
Cow position: chr23:17092701-17092422 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 196
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 55, 70

Conread position: 3-296
Cow position: chr23:15872914-15872599 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 61, 0

Conread position: 3-300
Cow position: chr23:11404474-11404175 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 213
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 55, 177

Conread position: 3-300
Cow position: chr23:14126360-14126660 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 211
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 26, 54

Conread position: 3-323
Cow position: chr23:30210557-30210211 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 247
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 55, 31

Conread position: 3-363
Cow position: chr23:28721415-28721060 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 267
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 239, 94

Conread position: 4-300
Cow position: chr23:40526185-40525887 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 217
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 54, 69

Conread position: 5-240
Cow position: chr23:645120-645360 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 53, 31

Conread position: 6-306
Cow position: chr23:792242-791932 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 219
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 27, 35

Conread position: 10-228
Cow position: chr23:2371169-2371394 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 110

Conread position: 12-300
Cow position: chr23:35177113-35177415 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 214
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 7, 100

Conread position: 15-376
Cow position: chr23:30773881-30773510 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 173

Conread position: 28-279
Cow position: chr23:16793409-16793657 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 184
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 30, 134

Conread position: 30-300
Cow position: chr23:21866558-21866837 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 195
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 83

Conread position: 32-300
Cow position: chr23:40651646-40651376 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 26, 96

Conread position: 41-300
Cow position: chr23:21659771-21660043 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 8, 186

Conread position: 42-300
Cow position: chr23:28895133-28894859 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 190
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 48

Conread position: 56-279
Cow position: chr23:6031725-6031951 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 120, 61

Conread position: 56-357
Cow position: chr23:16072476-16072173 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 213
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 117, 49

Conread position: 57-266
Cow position: chr23:2761826-2762033 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 121, 68

Conread position: 57-302
Cow position: chr23:32063518-32063280 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 76-254
Cow position: chr23:38058482-38058309 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 103, 0

Conread position: 105-363
Cow position: chr23:26861344-26861610 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 185
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 136, 63

Conread position: 107-300
Cow position: chr23:18326701-18326900 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 72, 127

Conread position: 127-279
Cow position: chr23:23192236-23192080 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 55, 84

Conread position: 127-360
Cow position: chr23:10424748-10424979 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 41, 136

Conread position: 127-363
Cow position: chr23:21276108-21275841 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 197
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 59, 233

Conread position: 128-301
Cow position: chr23:35498106-35497931 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 51, 21

Conread position: 131-295
Cow position: chr23:29393354-29393522 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 135-279
Cow position: chr23:14543300-14543149 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 135-354
Cow position: chr23:1677319-1677561 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 50, 218

Conread position: 137-360
Cow position: chr23:7611193-7611434 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 43, 210

Conread position: 139-360
Cow position: chr23:22418923-22419146 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 142, 43

Conread position: 141-259
Cow position: chr23:24515959-24515834 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 183-326
Cow position: chr23:6667442-6667591 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 91, 23

Show alignments to all cow chromosomes.