Cow genome map

Conread name: OvaN-UMC-pnatal4-008-h10

Conread position: 1-169
Cow position: chr24:39500523-39500348 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 1-172
Cow position: chr24:44041250-44041078 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 35, 29

Conread position: 1-190
Cow position: chr24:38266952-38267141 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 138, 68

Conread position: 1-193
Cow position: chr24:37205120-37204924 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 1-207
Cow position: chr24:43733728-43733946 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 61, 0

Conread position: 1-218
Cow position: chr24:43448836-43448627 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 147
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 1-231
Cow position: chr24:39258923-39259157 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 20, 113

Conread position: 1-236
Cow position: chr24:24250491-24250732 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 37, 29

Conread position: 1-238
Cow position: chr24:29063887-29063655 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 57, 91

Conread position: 1-239
Cow position: chr24:30484185-30483944 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 24, 33

Conread position: 1-240
Cow position: chr24:16476165-16476411 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 52, 40

Conread position: 1-240
Cow position: chr24:28028948-28028703 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 171
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 12, 109

Conread position: 1-240
Cow position: chr24:35794981-35794730 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 128

Conread position: 1-246
Cow position: chr24:30177995-30178238 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 123

Conread position: 1-257
Cow position: chr24:42581072-42580813 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 183, 68

Conread position: 1-258
Cow position: chr24:23685302-23685039 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 57, 108

Conread position: 1-261
Cow position: chr24:27267394-27267653 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 175
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 34

Conread position: 1-264
Cow position: chr24:6341929-6342205 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 55, 264

Conread position: 1-270
Cow position: chr24:29389005-29389271 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 62, 87

Conread position: 1-275
Cow position: chr24:211740-212032 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 199
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 125

Conread position: 1-275
Cow position: chr24:6061640-6061355 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 172

Conread position: 1-275
Cow position: chr24:19769257-19769534 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 38, 29

Conread position: 1-275
Cow position: chr24:29679552-29679268 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 67, 129

Conread position: 1-275
Cow position: chr24:40129881-40130174 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 200
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 63, 209

Conread position: 1-276
Cow position: chr24:14746394-14746695 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 57, 71

Conread position: 1-276
Cow position: chr24:35529682-35529953 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 100

Conread position: 1-279
Cow position: chr24:17980973-17981233 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 175, 47

Conread position: 1-279
Cow position: chr24:39681614-39681900 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 123

Conread position: 1-279
Cow position: chr24:42103133-42103415 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 18

Conread position: 1-280
Cow position: chr24:12992814-12993091 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 33

Conread position: 1-282
Cow position: chr24:25229299-25229012 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 57, 177

Conread position: 1-292
Cow position: chr24:5849643-5849334 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 50, 119

Conread position: 1-295
Cow position: chr24:35568946-35569242 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 59, 72

Conread position: 1-300
Cow position: chr24:1272110-1271820 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 57, 72

Conread position: 1-300
Cow position: chr24:1438507-1438200 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 210
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 59, 31

Conread position: 1-300
Cow position: chr24:6508005-6507701 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 100

Conread position: 1-300
Cow position: chr24:7079548-7079854 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 217
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 59, 13

Conread position: 1-300
Cow position: chr24:18243706-18243397 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 63, 32

Conread position: 1-300
Cow position: chr24:25677793-25678093 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 30

Conread position: 1-300
Cow position: chr24:27054159-27054481 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 54, 146

Conread position: 1-300
Cow position: chr24:27683683-27683387 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 230
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 57, 102

Conread position: 1-300
Cow position: chr24:28279400-28279694 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 57, 147

Conread position: 1-300
Cow position: chr24:30860395-30860705 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 292

Conread position: 1-301
Cow position: chr24:34369249-34368937 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 220
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 57, 124

Conread position: 1-301
Cow position: chr24:39350448-39350146 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 29

Conread position: 1-302
Cow position: chr24:29781920-29782233 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 57, 41

Conread position: 1-303
Cow position: chr24:17104807-17104497 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 173, 86

Conread position: 1-314
Cow position: chr24:39123628-39123944 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 217
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 186, 11

Conread position: 1-359
Cow position: chr24:27633172-27633546 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 271
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 57, 92

Conread position: 1-363
Cow position: chr24:32158513-32158124 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 123

Conread position: 1-367
Cow position: chr24:24311259-24311657 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 2-237
Cow position: chr24:32370150-32369915 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 105, 58

Conread position: 2-238
Cow position: chr24:43364123-43364364 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 33, 28

Conread position: 2-256
Cow position: chr24:39955286-39955025 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 128

Conread position: 2-279
Cow position: chr24:40091812-40091531 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 102

Conread position: 2-300
Cow position: chr24:14617416-14617730 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 51, 205

Conread position: 2-300
Cow position: chr24:39742584-39742884 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 23, 30

Conread position: 3-175
Cow position: chr24:40346749-40346573 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 59, 0

Conread position: 3-239
Cow position: chr24:41333114-41332870 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 50, 11

Conread position: 3-296
Cow position: chr24:42943360-42943053 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 43, 182

Conread position: 3-300
Cow position: chr24:2970846-2970539 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 211
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 41, 128

Conread position: 3-301
Cow position: chr24:17412496-17412796 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 210
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 29

Conread position: 3-349
Cow position: chr24:14337495-14337865 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 250
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 55, 105

Conread position: 3-363
Cow position: chr24:31378516-31378899 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 155

Conread position: 4-295
Cow position: chr24:32759002-32758697 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 220
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 54, 257

Conread position: 4-363
Cow position: chr24:23824655-23824282 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 255
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 53, 66

Conread position: 5-257
Cow position: chr24:20862194-20861938 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 95

Conread position: 7-275
Cow position: chr24:32823018-32822726 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 9-300
Cow position: chr24:42453764-42454056 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 51, 106

Conread position: 11-300
Cow position: chr24:32894178-32894461 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 198
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 40, 75

Conread position: 15-279
Cow position: chr24:28724212-28724465 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 53, 111

Conread position: 21-254
Cow position: chr24:13297935-13297691 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 25-279
Cow position: chr24:29041818-29042069 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 28, 125

Conread position: 30-363
Cow position: chr24:18787131-18786778 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 300

Conread position: 33-238
Cow position: chr24:34396378-34396176 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 35-279
Cow position: chr24:32086122-32085882 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 116, 23

Conread position: 37-323
Cow position: chr24:7401424-7401127 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 93

Conread position: 47-184
Cow position: chr24:29691486-29691345 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 56-300
Cow position: chr24:35827559-35827807 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 133, 49

Conread position: 58-356
Cow position: chr24:36801205-36801520 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 228
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 122, 26

Conread position: 60-300
Cow position: chr24:26455661-26455911 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 17, 9

Conread position: 61-261
Cow position: chr24:14103411-14103616 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 96

Conread position: 62-279
Cow position: chr24:19611834-19612055 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 116, 13

Conread position: 63-301
Cow position: chr24:31258513-31258269 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 40, 239

Conread position: 76-279
Cow position: chr24:11201809-11201599 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 26, 135

Conread position: 87-300
Cow position: chr24:16055647-16055442 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 155, 30

Conread position: 87-300
Cow position: chr24:40809510-40809295 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 123

Conread position: 97-281
Cow position: chr24:36713610-36713806 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 100-279
Cow position: chr24:18393661-18393475 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 149
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 78, 5

Conread position: 100-300
Cow position: chr24:41963233-41963032 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 101-279
Cow position: chr24:43393308-43393480 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 95, 88

Conread position: 128-300
Cow position: chr24:19754469-19754642 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 139-297
Cow position: chr24:10545980-10546136 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 142-279
Cow position: chr24:18567614-18567470 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 72

Conread position: 146-300
Cow position: chr24:24495932-24495771 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 211-360
Cow position: chr24:16481326-16481166 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 55, 0

Show alignments to all cow chromosomes.