Cow genome map
| Conread name: | OvaN-UMC-pnatal4-008-h10 |
| Conread position: | 1-214 |
| Cow position: | chr25:395136-395355 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 1-224 |
| Cow position: | chr25:30035329-30035560 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 1-226 |
| Cow position: | chr25:35332946-35333172 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 102, 44 |
| Conread position: | 1-237 |
| Cow position: | chr25:8560650-8560893 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 1-239 |
| Cow position: | chr25:21895105-21894858 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 57, 124 |
| Conread position: | 1-239 |
| Cow position: | chr25:26087296-26087546 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 1-246 |
| Cow position: | chr25:13333204-13333451 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 211 |
| Conread position: | 1-255 |
| Cow position: | chr25:17365476-17365212 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 1-264 |
| Cow position: | chr25:21245826-21245549 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-264 |
| Cow position: | chr25:24572855-24573120 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 1-274 |
| Cow position: | chr25:12234977-12234701 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 128 |
| Conread position: | 1-275 |
| Cow position: | chr25:7216609-7216891 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 1-275 |
| Cow position: | chr25:9990309-9990043 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 1-275 |
| Cow position: | chr25:18564276-18564553 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 97, 57 |
| Conread position: | 1-277 |
| Cow position: | chr25:14570150-14570442 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 1-279 |
| Cow position: | chr25:14467304-14467023 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 8 |
| Conread position: | 1-279 |
| Cow position: | chr25:27504403-27504127 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 55, 187 |
| Conread position: | 1-280 |
| Cow position: | chr25:18130855-18131140 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 52, 110 |
| Conread position: | 1-280 |
| Cow position: | chr25:18265944-18266236 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 52, 43 |
| Conread position: | 1-295 |
| Cow position: | chr25:20625150-20624849 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 105 |
| Conread position: | 1-297 |
| Cow position: | chr25:18206519-18206214 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 1-299 |
| Cow position: | chr25:11131362-11131675 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 1-300 |
| Cow position: | chr25:8576474-8576786 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 57, 146 |
| Conread position: | 1-300 |
| Cow position: | chr25:10012268-10011967 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 179 |
| Conread position: | 1-300 |
| Cow position: | chr25:18161082-18161374 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 179, 30 |
| Conread position: | 1-300 |
| Cow position: | chr25:20496321-20496630 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 1-300 |
| Cow position: | chr25:24405955-24405642 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 217 |
| Conread position: | 1-300 |
| Cow position: | chr25:34970260-34970554 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 1-301 |
| Cow position: | chr25:18000735-18000439 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 179, 57 |
| Conread position: | 1-306 |
| Cow position: | chr25:25961745-25962056 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 1-359 |
| Cow position: | chr25:22735906-22736270 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 50, 114 |
| Conread position: | 1-363 |
| Cow position: | chr25:22575740-22575356 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 123 |
| Conread position: | 1-363 |
| Cow position: | chr25:40957206-40956814 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 2-228 |
| Cow position: | chr25:35347686-35347919 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 2-237 |
| Cow position: | chr25:9957250-9957014 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 105, 28 |
| Conread position: | 2-270 |
| Cow position: | chr25:33691335-33691619 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 56, 149 |
| Conread position: | 2-279 |
| Cow position: | chr25:22910064-22909786 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 56, 40 |
| Conread position: | 2-301 |
| Cow position: | chr25:24136654-24136349 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 56, 151 |
| Conread position: | 3-237 |
| Cow position: | chr25:12239365-12239123 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 3-237 |
| Cow position: | chr25:20007930-20008156 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 191, 44 |
| Conread position: | 3-352 |
| Cow position: | chr25:23410446-23410821 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 4-232 |
| Cow position: | chr25:10205095-10204855 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 4-300 |
| Cow position: | chr25:34669027-34669334 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 5-364 |
| Cow position: | chr25:29312558-29312162 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 7-363 |
| Cow position: | chr25:33245720-33246086 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 10-237 |
| Cow position: | chr25:2126258-2126485 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 45, 114 |
| Conread position: | 10-300 |
| Cow position: | chr25:10748715-10748409 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 11-352 |
| Cow position: | chr25:8512304-8511930 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 229 |
| Conread position: | 17-316 |
| Cow position: | chr25:16007586-16007887 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 41, 164 |
| Conread position: | 39-278 |
| Cow position: | chr25:26457865-26457608 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 41-278 |
| Cow position: | chr25:32606496-32606257 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 159, 12 |
| Conread position: | 41-284 |
| Cow position: | chr25:5972295-5972533 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 41-307 |
| Cow position: | chr25:11989688-11989415 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 80, 12 |
| Conread position: | 42-275 |
| Cow position: | chr25:21893163-21893405 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 45 |
| Conread position: | 51-297 |
| Cow position: | chr25:23355751-23356002 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 56-300 |
| Cow position: | chr25:13472050-13471810 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 235, 60 |
| Conread position: | 56-326 |
| Cow position: | chr25:36644109-36643851 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 145, 16 |
| Conread position: | 62-300 |
| Cow position: | chr25:36501392-36501149 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 51, 131 |
| Conread position: | 68-279 |
| Cow position: | chr25:33112118-33111902 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 14, 106 |
| Conread position: | 76-323 |
| Cow position: | chr25:16691523-16691789 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 100, 127 |
| Conread position: | 91-300 |
| Cow position: | chr25:12932505-12932718 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 147, 78 |
| Conread position: | 97-279 |
| Cow position: | chr25:16560295-16560102 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 100-307 |
| Cow position: | chr25:7480094-7480296 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 101-300 |
| Cow position: | chr25:14075187-14075395 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 81, 57 |
| Conread position: | 122-297 |
| Cow position: | chr25:26240443-26240627 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 72, 168 |
| Conread position: | 122-360 |
| Cow position: | chr25:22542898-22542655 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 165 |
| Conread position: | 126-300 |
| Cow position: | chr25:34379199-34379013 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 168 |
| Conread position: | 135-307 |
| Cow position: | chr25:20811453-20811275 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 150-300 |
| Cow position: | chr25:13727453-13727296 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 152-300 |
| Cow position: | chr25:15358426-15358276 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 34, 14 |
Show alignments to all cow chromosomes.