Cow genome map
| Conread name: | OvaN-UMC-pnatal4-008-h10 |
| Conread position: | 1-127 |
| Cow position: | chr27:783903-783773 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-176 |
| Cow position: | chr27:6038764-6038591 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-180 |
| Cow position: | chr27:16580796-16580612 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-190 |
| Cow position: | chr27:1498487-1498298 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 1-190 |
| Cow position: | chr27:6037296-6037104 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 1-190 |
| Cow position: | chr27:6620319-6620125 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-190 |
| Cow position: | chr27:12231735-12231930 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 53, 127 |
| Conread position: | 1-190 |
| Cow position: | chr27:15200871-15200681 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 122 |
| Conread position: | 1-190 |
| Cow position: | chr27:20592157-20591961 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 1-190 |
| Cow position: | chr27:23659167-23659355 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 1-200 |
| Cow position: | chr27:27003108-27003305 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 1-200 |
| Cow position: | chr27:28164238-28164435 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 1-201 |
| Cow position: | chr27:27550574-27550774 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 97 |
| Conread position: | 1-239 |
| Cow position: | chr27:17472986-17472736 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-259 |
| Cow position: | chr27:4664643-4664386 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 112 |
| Conread position: | 1-264 |
| Cow position: | chr27:6541798-6541531 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 93 |
| Conread position: | 1-270 |
| Cow position: | chr27:22330496-22330768 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 1-270 |
| Cow position: | chr27:25277310-25277036 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 102, 124 |
| Conread position: | 1-272 |
| Cow position: | chr27:26935746-26936006 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 100 |
| Conread position: | 1-273 |
| Cow position: | chr27:9169471-9169751 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 130 |
| Conread position: | 1-274 |
| Cow position: | chr27:25471313-25471028 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 57, 125 |
| Conread position: | 1-275 |
| Cow position: | chr27:6074090-6073819 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 126 |
| Conread position: | 1-276 |
| Cow position: | chr27:13252183-13251903 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 1-277 |
| Cow position: | chr27:24224734-24225013 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 176, 68 |
| Conread position: | 1-279 |
| Cow position: | chr27:20510361-20510099 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-279 |
| Cow position: | chr27:25411346-25411626 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 1-279 |
| Cow position: | chr27:25998878-25998585 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 1-280 |
| Cow position: | chr27:8430265-8430556 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 1-280 |
| Cow position: | chr27:15319625-15319339 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 1-280 |
| Cow position: | chr27:19543736-19544038 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 123, 104 |
| Conread position: | 1-282 |
| Cow position: | chr27:22454607-22454895 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 1-290 |
| Cow position: | chr27:25676400-25676103 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 144 |
| Conread position: | 1-295 |
| Cow position: | chr27:6160155-6159848 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 1-296 |
| Cow position: | chr27:26300012-26299709 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 1-296 |
| Cow position: | chr27:27049739-27050042 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 1-297 |
| Cow position: | chr27:6454388-6454072 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 57, 104 |
| Conread position: | 1-297 |
| Cow position: | chr27:21182010-21181706 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 1-300 |
| Cow position: | chr27:13006008-13005712 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 106 |
| Conread position: | 1-300 |
| Cow position: | chr27:14937255-14937567 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 1-300 |
| Cow position: | chr27:21138996-21138693 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 100 |
| Conread position: | 1-300 |
| Cow position: | chr27:26440883-26441185 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 195 |
| Conread position: | 1-300 |
| Cow position: | chr27:27053470-27053158 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 112 |
| Conread position: | 1-300 |
| Cow position: | chr27:29019575-29019871 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 104 |
| Conread position: | 1-300 |
| Cow position: | chr27:30561086-30560788 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 125 |
| Conread position: | 1-301 |
| Cow position: | chr27:29038767-29039079 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 21, 111 |
| Conread position: | 1-306 |
| Cow position: | chr27:3269618-3269331 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 174, 48 |
| Conread position: | 1-307 |
| Cow position: | chr27:30702908-30703202 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 111, 46 |
| Conread position: | 1-363 |
| Cow position: | chr27:707121-706760 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 2-131 |
| Cow position: | chr27:13847811-13847677 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 2-193 |
| Cow position: | chr27:4812704-4812902 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 2-300 |
| Cow position: | chr27:465124-464834 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 276, 39 |
| Conread position: | 2-300 |
| Cow position: | chr27:11416614-11416315 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 2-373 |
| Cow position: | chr27:26492528-26492923 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 3-264 |
| Cow position: | chr27:19647770-19648043 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 50, 121 |
| Conread position: | 3-300 |
| Cow position: | chr27:491059-490763 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 55 |
| Conread position: | 5-190 |
| Cow position: | chr27:19637812-19637624 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 59, 127 |
| Conread position: | 7-307 |
| Cow position: | chr27:23600433-23600128 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 154 |
| Conread position: | 11-280 |
| Cow position: | chr27:23662441-23662710 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 12-258 |
| Cow position: | chr27:12243973-12244221 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 95 |
| Conread position: | 12-297 |
| Cow position: | chr27:19577837-19577540 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 46, 98 |
| Conread position: | 12-363 |
| Cow position: | chr27:8048574-8048950 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 123 |
| Conread position: | 19-297 |
| Cow position: | chr27:4007090-4007391 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 23-190 |
| Cow position: | chr27:30677061-30676890 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 23-279 |
| Cow position: | chr27:19601528-19601256 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 35, 106 |
| Conread position: | 28-224 |
| Cow position: | chr27:4011821-4011622 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 33-363 |
| Cow position: | chr27:16493713-16493367 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 34-207 |
| Cow position: | chr27:18948450-18948634 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 36-279 |
| Cow position: | chr27:12424788-12425033 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 141, 18 |
| Conread position: | 41-276 |
| Cow position: | chr27:19909506-19909265 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 41-306 |
| Cow position: | chr27:14874767-14874497 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 71, 15 |
| Conread position: | 45-300 |
| Cow position: | chr27:11356419-11356674 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 22 |
| Conread position: | 56-300 |
| Cow position: | chr27:10086570-10086806 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 134, 34 |
| Conread position: | 57-363 |
| Cow position: | chr27:25970505-25970188 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 203, 113 |
| Conread position: | 62-355 |
| Cow position: | chr27:9691944-9692228 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 124, 88 |
| Conread position: | 97-310 |
| Cow position: | chr27:23959366-23959154 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 205, 92 |
| Conread position: | 98-279 |
| Cow position: | chr27:19083645-19083833 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 100-300 |
| Cow position: | chr27:783774-783567 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 180 |
| Conread position: | 123-300 |
| Cow position: | chr27:6884069-6883896 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 15 |
| Conread position: | 131-280 |
| Cow position: | chr27:19869869-19869713 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 139-292 |
| Cow position: | chr27:16563620-16563463 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 120 |
Show alignments to all cow chromosomes.