Cow genome map

Conread name: OvaN-UMC-pnatal4-008-h10

Conread position: 1-183
Cow position: chr29:26615943-26615755 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 126

Conread position: 1-190
Cow position: chr29:3395892-3396080 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 37, 24

Conread position: 1-190
Cow position: chr29:5964631-5964446 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 173, 39

Conread position: 1-190
Cow position: chr29:24197847-24197671 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 1-224
Cow position: chr29:30545078-30544857 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 89, 43

Conread position: 1-227
Cow position: chr29:26734815-26735043 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 88

Conread position: 1-229
Cow position: chr29:2984666-2984907 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 1-229
Cow position: chr29:25737634-25737398 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 40, 29

Conread position: 1-237
Cow position: chr29:6286376-6286137 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 163
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 33

Conread position: 1-239
Cow position: chr29:19821078-19821310 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 130, 48

Conread position: 1-239
Cow position: chr29:41747222-41747474 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 1-240
Cow position: chr29:18338764-18338513 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 172
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 59, 0

Conread position: 1-240
Cow position: chr29:30812532-30812779 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 18, 31

Conread position: 1-241
Cow position: chr29:1956307-1956063 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 168
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 57, 72

Conread position: 1-254
Cow position: chr29:36404603-36404848 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 57, 180

Conread position: 1-255
Cow position: chr29:9686219-9685965 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 48, 120

Conread position: 1-256
Cow position: chr29:21000423-21000684 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 177
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 26

Conread position: 1-259
Cow position: chr29:650056-650329 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 201
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 55, 210

Conread position: 1-259
Cow position: chr29:25088535-25088793 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 128

Conread position: 1-261
Cow position: chr29:707163-706904 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 170, 13

Conread position: 1-264
Cow position: chr29:9709480-9709750 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 181
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 33

Conread position: 1-264
Cow position: chr29:23984181-23983900 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 190
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 22, 33

Conread position: 1-270
Cow position: chr29:4520117-4520398 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 57, 129

Conread position: 1-275
Cow position: chr29:9911959-9912243 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 184, 52

Conread position: 1-278
Cow position: chr29:26986724-26986999 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 123, 21

Conread position: 1-279
Cow position: chr29:13553914-13554207 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 1-279
Cow position: chr29:16359395-16359691 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 57, 40

Conread position: 1-279
Cow position: chr29:18695039-18695323 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 57, 116

Conread position: 1-279
Cow position: chr29:29302872-29302588 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 57, 16

Conread position: 1-279
Cow position: chr29:37719692-37719957 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 57, 90

Conread position: 1-280
Cow position: chr29:13127326-13127048 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 174, 51

Conread position: 1-282
Cow position: chr29:22162469-22162175 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 34, 26

Conread position: 1-297
Cow position: chr29:17339515-17339216 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 210
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 57, 116

Conread position: 1-297
Cow position: chr29:39023556-39023249 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 212
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 195, 57

Conread position: 1-300
Cow position: chr29:356108-356413 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 57, 78

Conread position: 1-300
Cow position: chr29:4367502-4367818 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 57, 298

Conread position: 1-300
Cow position: chr29:12784173-12783872 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 203
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 65, 126

Conread position: 1-300
Cow position: chr29:13634518-13634207 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 210
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 63, 14

Conread position: 1-300
Cow position: chr29:18963522-18963826 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 66, 14

Conread position: 1-300
Cow position: chr29:22936061-22936363 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 206
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 24, 34

Conread position: 1-300
Cow position: chr29:34609942-34609644 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 57, 149

Conread position: 1-300
Cow position: chr29:37961196-37960884 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 24, 33

Conread position: 1-300
Cow position: chr29:40583579-40583878 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 203
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 37, 29

Conread position: 1-301
Cow position: chr29:19907138-19907448 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 14

Conread position: 1-303
Cow position: chr29:477884-478204 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 221
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 57, 160

Conread position: 1-306
Cow position: chr29:9139190-9139520 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 220
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 63, 320

Conread position: 1-352
Cow position: chr29:12901331-12900972 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 257
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 57, 264

Conread position: 1-363
Cow position: chr29:7408107-7407731 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 133

Conread position: 1-364
Cow position: chr29:40337742-40337366 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 272
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 57, 29

Conread position: 2-195
Cow position: chr29:11915599-11915799 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 56, 128

Conread position: 2-214
Cow position: chr29:603528-603316 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 146, 103

Conread position: 2-237
Cow position: chr29:463871-463630 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 169
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 99

Conread position: 2-238
Cow position: chr29:19762055-19762296 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 56, 127

Conread position: 2-238
Cow position: chr29:42268474-42268722 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 122

Conread position: 2-255
Cow position: chr29:21534897-21534626 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 56, 101

Conread position: 2-275
Cow position: chr29:39567470-39567749 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 56, 123

Conread position: 2-279
Cow position: chr29:26129281-26129565 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 29

Conread position: 2-360
Cow position: chr29:34736683-34736317 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 28

Conread position: 3-166
Cow position: chr29:1612795-1612625 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 98

Conread position: 3-173
Cow position: chr29:10475195-10475368 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 43, 114

Conread position: 3-254
Cow position: chr29:11071921-11071665 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 42, 186

Conread position: 3-275
Cow position: chr29:12679938-12680223 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 25, 32

Conread position: 3-295
Cow position: chr29:17543234-17543527 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 55, 138

Conread position: 4-202
Cow position: chr29:44135679-44135474 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 101

Conread position: 4-240
Cow position: chr29:6472100-6472336 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 119

Conread position: 4-265
Cow position: chr29:24952469-24952744 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 54, 131

Conread position: 4-270
Cow position: chr29:87237-86949 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 34, 26

Conread position: 4-361
Cow position: chr29:12451156-12451535 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 34

Conread position: 4-363
Cow position: chr29:11787578-11787959 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 27

Conread position: 5-279
Cow position: chr29:19508745-19509017 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 170, 104

Conread position: 6-300
Cow position: chr29:32655639-32655343 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 46, 68

Conread position: 6-360
Cow position: chr29:18072716-18073108 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 52, 167

Conread position: 7-300
Cow position: chr29:38580763-38581071 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 51, 86

Conread position: 10-279
Cow position: chr29:32644713-32644982 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 7, 81

Conread position: 10-297
Cow position: chr29:709332-709044 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 216
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 43, 184

Conread position: 11-279
Cow position: chr29:21925001-21925264 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 199
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 170

Conread position: 12-214
Cow position: chr29:23743247-23743053 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 172, 50

Conread position: 12-276
Cow position: chr29:17965758-17966031 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 186
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 74

Conread position: 12-300
Cow position: chr29:10153997-10153704 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 48, 178

Conread position: 18-273
Cow position: chr29:7663467-7663203 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 8, 42

Conread position: 19-280
Cow position: chr29:11433922-11434191 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 179
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 107

Conread position: 33-300
Cow position: chr29:19897426-19897701 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 144, 79

Conread position: 36-322
Cow position: chr29:38992996-38992708 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 90, 32

Conread position: 41-300
Cow position: chr29:26298809-26299061 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 31, 10

Conread position: 41-300
Cow position: chr29:26985055-26985319 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 181
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 121, 10

Conread position: 47-259
Cow position: chr29:35442630-35442412 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 124, 0

Conread position: 55-278
Cow position: chr29:29559880-29559649 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 66

Conread position: 56-264
Cow position: chr29:4085160-4085364 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 72, 56

Conread position: 56-295
Cow position: chr29:27285636-27285858 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 56-300
Cow position: chr29:16055294-16055040 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 56, 0

Conread position: 57-187
Cow position: chr29:7392941-7393071 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 57-277
Cow position: chr29:25924126-25923892 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 59-279
Cow position: chr29:41083003-41083219 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 133, 36

Conread position: 76-280
Cow position: chr29:6771993-6772204 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 108, 62

Conread position: 79-363
Cow position: chr29:18540926-18541220 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 97, 26

Conread position: 94-279
Cow position: chr29:14758984-14758792 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 83, 0

Conread position: 97-301
Cow position: chr29:4444597-4444811 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 19, 29

Conread position: 103-279
Cow position: chr29:23233336-23233518 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 29, 146

Conread position: 104-360
Cow position: chr29:7054308-7054581 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 53, 40

Show alignments to all cow chromosomes.