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Cow genome map

           
Conread name:
           
OvaN-UMC-pnatal4-008-h10
        

               
Conread position:
               
1-132
               

               
Cow position:
               
chr3:75143272-75143137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr3:66964536-66964385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr3:55815104-55815264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 72
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr3:70913319-70913151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr3:32399494-32399325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr3:34316204-34316016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr3:54945884-54946073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 128
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr3:66116352-66116165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr3:22021213-22021026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 110
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr3:42461460-42461647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 164
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr3:42603590-42603789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
45, 131
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr3:23944857-23945081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr3:3690963-3690736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 43
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr3:19789359-19789125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr3:52863425-52863182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr3:9641324-9641570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
50, 125
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr3:23876758-23877000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
96, 121
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr3:44932268-44932519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr3:55189991-55189751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr3:9843343-9843591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr3:52650773-52650524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 127
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr3:23477996-23478232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 116
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr3:48370891-48371139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
59, 122
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:7366115-7365880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 109
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr3:18393624-18393385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
198, 120
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr3:22170950-22171205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr3:8752556-8752814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr3:82075288-82075035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
199, 37
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr3:38497711-38497957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 87
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr3:56704094-56703823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
57, 121
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr3:69849742-69849481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
157, 96
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:53112929-53113208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 128
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:59206000-59206271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
57, 207
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr3:5101001-5100733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
201, 57
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr3:17222384-17222103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr3:37186593-37186866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
68, 125
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr3:49461177-49460886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 104
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr3:49650139-49650428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr3:66900982-66900693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 152
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr3:54862662-54862373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr3:2393206-2392923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr3:36174314-36174025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr3:56059567-56059856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr3:19708341-19708062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr3:23476758-23477034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 24
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr3:63147384-63147104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
69, 93
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr3:4223076-4223348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
52, 44
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr3:11949593-11949324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
57, 128
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr3:17742269-17742539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr3:22271676-22271406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
52, 36
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr3:50462102-50462385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 128
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr3:51146906-51146622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 129
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr3:82473815-82474089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
56, 182
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr3:26553952-26553665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr3:27546075-27545769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
68, 10
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr3:29507356-29507632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr3:45647899-45648180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
184, 67
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr3:33633127-33632856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
44, 83
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr3:54881516-54881818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr3:49337488-49337773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr3:70754128-70754411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 120
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr3:5420106-5419804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 103
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr3:14633227-14632919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 49
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr3:37451829-37452133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr3:12255240-12255545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr3:44254670-44254372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
92, 68
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:1299993-1300285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
11, 129
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:9074562-9074276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
183, 57
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:17284597-17284897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
48, 104
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:23111745-23111443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
57, 121
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:26493466-26493161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 165
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:27532902-27532585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
57, 235
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:31933342-31933030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
9, 73
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:32597168-32596874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
57, 182
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:41718148-41718461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 253
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:44861548-44861242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 162
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:52652314-52652010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 120
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:53588630-53588314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 43
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:58350345-58350642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
57, 181
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:58865699-58865404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 164
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:64172205-64172510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 30
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:65413516-65413208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
68, 33
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:66708312-66707997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:68262540-68262834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
185, 55
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:71231166-71231465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr3:20471600-20471295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr3:33327464-33327779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
57, 297
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr3:63203205-63203503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr3:73777038-73777340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr3:76188454-76188749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
184, 65
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr3:58286138-58285832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 129
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr3:73956786-73957092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
61, 120
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr3:74611322-74611647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 148
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr3:31907386-31907051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
57, 105
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr3:42563212-42563569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
57, 262
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr3:56637426-56637795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 112
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr3:64536784-64536423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr3:58174671-58175048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr3:68342494-68342109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 155
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr3:8923803-8924192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 104
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr3:22954091-22953734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
61, 29
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr3:23092223-23091827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr3:42584302-42584689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr3:55992111-55991718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 98
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr3:59101595-59101961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
106, 46
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr3:20092745-20092361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 40
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr3:16810030-16809846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr3:48433706-48433889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
2-184
               

               
Cow position:
               
chr3:3457673-3457865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr3:32869910-32870100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 116
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chr3:43657950-43657728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr3:45744474-45744689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
174, 56
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr3:51227917-51228149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 82
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr3:69961950-69961716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr3:78530299-78530539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 103
               

               
Conread position:
               
2-275
               

               
Cow position:
               
chr3:22232882-22232609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
120, 28
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chr3:36100589-36100883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 103
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chr3:68291327-68291602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr3:7678432-7678705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
33, 28
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr3:55460740-55460445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 150
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr3:51255545-51255843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 223
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr3:39554561-39554269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 118
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr3:42480381-42480685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
56, 45
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chr3:8457416-8457724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
56, 93
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chr3:46094597-46094891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chr3:48629824-48629519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
175, 56
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chr3:59608268-59608572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
56, 143
               

               
Conread position:
               
3-172
               

               
Cow position:
               
chr3:48211266-48211422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
3-239
               

               
Cow position:
               
chr3:14625626-14625386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr3:72675849-72676096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr3:75158127-75158366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
109, 52
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr3:59588281-59588550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
59, 127
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chr3:52836142-52835841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr3:70130050-70129781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 102
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr3:71135550-71135835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
55, 246
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr3:74699633-74699334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr3:50614401-50614711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
55, 134
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr3:54340652-54340352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
53, 117
               

               
Conread position:
               
3-363
               

               
Cow position:
               
chr3:26836029-26835677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
55, 27
               

               
Conread position:
               
3-363
               

               
Cow position:
               
chr3:62883965-62884348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 41
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr3:65800356-65800629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
4-300
               

               
Cow position:
               
chr3:15685154-15684852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr3:77224883-77225263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
104, 54
               

               
Conread position:
               
5-270
               

               
Cow position:
               
chr3:18217002-18216725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
73, 64
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr3:15052181-15051905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr3:55373811-55373499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
6-275
               

               
Cow position:
               
chr3:11711718-11712010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
8-257
               

               
Cow position:
               
chr3:55106676-55106413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 126
               

               
Conread position:
               
8-279
               

               
Cow position:
               
chr3:67930411-67930138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
8-298
               

               
Cow position:
               
chr3:51598150-51598439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 83
               

               
Conread position:
               
8-353
               

               
Cow position:
               
chr3:61009669-61009304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
36, 118
               

               
Conread position:
               
9-300
               

               
Cow position:
               
chr3:74561638-74561354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
10-240
               

               
Cow position:
               
chr3:42594888-42594647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 155
               

               
Conread position:
               
10-298
               

               
Cow position:
               
chr3:62292350-62292058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 114
               

               
Conread position:
               
11-279
               

               
Cow position:
               
chr3:49140263-49140000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
162, 11
               

               
Conread position:
               
11-284
               

               
Cow position:
               
chr3:11422514-11422790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 108
               

               
Conread position:
               
11-295
               

               
Cow position:
               
chr3:53538294-53538578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
47, 110
               

               
Conread position:
               
11-300
               

               
Cow position:
               
chr3:18458889-18458596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 111
               

               
Conread position:
               
13-168
               

               
Cow position:
               
chr3:49428180-49428027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
49, 109
               

               
Conread position:
               
13-264
               

               
Cow position:
               
chr3:68146064-68145810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
13-297
               

               
Cow position:
               
chr3:42489538-42489234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
15-275
               

               
Cow position:
               
chr3:73759746-73759472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
16-228
               

               
Cow position:
               
chr3:47524734-47524513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 198
               

               
Conread position:
               
16-240
               

               
Cow position:
               
chr3:61913375-61913596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
16-300
               

               
Cow position:
               
chr3:3736062-3736368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
17-297
               

               
Cow position:
               
chr3:56711859-56711572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
158, 37
               

               
Conread position:
               
19-300
               

               
Cow position:
               
chr3:2198660-2198952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
39, 281
               

               
Conread position:
               
27-279
               

               
Cow position:
               
chr3:15976955-15977230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 6
               

               
Conread position:
               
28-360
               

               
Cow position:
               
chr3:63038921-63039247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 64
               

               
Conread position:
               
30-300
               

               
Cow position:
               
chr3:79376047-79376337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 68
               

               
Conread position:
               
31-260
               

               
Cow position:
               
chr3:49132260-49132034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
32-284
               

               
Cow position:
               
chr3:55777824-55778090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
41-275
               

               
Cow position:
               
chr3:68708199-68707968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
161, 12
               

               
Conread position:
               
41-275
               

               
Cow position:
               
chr3:68881307-68881076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
161, 10
               

               
Conread position:
               
41-279
               

               
Cow position:
               
chr3:83396001-83396231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
41-355
               

               
Cow position:
               
chr3:74206010-74205665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 89
               

               
Conread position:
               
42-326
               

               
Cow position:
               
chr3:50347771-50348067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
136, 97
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr3:78647311-78647499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
47-193
               

               
Cow position:
               
chr3:25079556-25079699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
135, 108
               

               
Conread position:
               
56-261
               

               
Cow position:
               
chr3:18757954-18757760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
56-275
               

               
Cow position:
               
chr3:20678016-20677797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
139, 65
               

               
Conread position:
               
56-277
               

               
Cow position:
               
chr3:8790772-8790553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr3:4082276-4082054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
45, 108
               

               
Conread position:
               
59-273
               

               
Cow position:
               
chr3:46226266-46226498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
59-363
               

               
Cow position:
               
chr3:50281936-50281601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
53, 81
               

               
Conread position:
               
75-346
               

               
Cow position:
               
chr3:28477926-28478210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
104, 174
               

               
Conread position:
               
76-300
               

               
Cow position:
               
chr3:61322684-61322910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
112, 49
               

               
Conread position:
               
94-348
               

               
Cow position:
               
chr3:25250765-25251041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
81, 115
               

               
Conread position:
               
96-279
               

               
Cow position:
               
chr3:20158260-20158445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
64, 109
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr3:40629926-40629710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
80, 117
               

               
Conread position:
               
97-240
               

               
Cow position:
               
chr3:51492640-51492790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
97-255
               

               
Cow position:
               
chr3:78954910-78954748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
98-363
               

               
Cow position:
               
chr3:46063357-46063625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
64, 98
               

               
Conread position:
               
100-279
               

               
Cow position:
               
chr3:55815721-55815898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
100-280
               

               
Cow position:
               
chr3:61116995-61116803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
100-363
               

               
Cow position:
               
chr3:11920177-11919887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 243
               

               
Conread position:
               
108-295
               

               
Cow position:
               
chr3:53091360-53091553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 167
               

               
Conread position:
               
108-355
               

               
Cow position:
               
chr3:34675590-34675866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
112-301
               

               
Cow position:
               
chr3:20405679-20405855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
120-363
               

               
Cow position:
               
chr3:9629764-9630032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
122-268
               

               
Cow position:
               
chr3:11124894-11124744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 120
               

               
Conread position:
               
122-363
               

               
Cow position:
               
chr3:64319078-64319335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
126-231
               

               
Cow position:
               
chr3:36125687-36125577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
126-355
               

               
Cow position:
               
chr3:39911167-39910916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
132-275
               

               
Cow position:
               
chr3:37873361-37873503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
132-279
               

               
Cow position:
               
chr3:58930637-58930782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
135-300
               

               
Cow position:
               
chr3:58632464-58632631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
135-360
               

               
Cow position:
               
chr3:28238675-28238436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
144-295
               

               
Cow position:
               
chr3:58291987-58291828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
144-303
               

               
Cow position:
               
chr3:47680050-47679887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
146-300
               

               
Cow position:
               
chr3:74035629-74035472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
8, 62
               
Show alignments to all cow chromosomes.