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Cow genome map

           
Conread name:
           
OvaP-UMC-pputal2-003-f07
        

               
Conread position:
               
1-379
               

               
Cow position:
               
chr13:36937291-36937659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
209, 66
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr13:46985432-46985038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
131, 52
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr13:17886898-17886476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
203, 51
               

               
Conread position:
               
1-486
               

               
Cow position:
               
chr13:41254045-41253549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 67
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr13:25531371-25531871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 26
               

               
Conread position:
               
1-508
               

               
Cow position:
               
chr13:60429663-60430173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 67
               

               
Conread position:
               
1-509
               

               
Cow position:
               
chr13:26382803-26383330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 75
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chr13:32536074-32535557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr13:9803482-9802960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
1-565
               

               
Cow position:
               
chr13:12546487-12547057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 58
               

               
Conread position:
               
1-624
               

               
Cow position:
               
chr13:13261434-13260789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 68
               

               
Conread position:
               
1-630
               

               
Cow position:
               
chr13:12670036-12670660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 71
               

               
Conread position:
               
1-630
               

               
Cow position:
               
chr13:15869537-15868901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr13:16248075-16247435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 67
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr13:20879417-20880034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 69
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr13:22085340-22085941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
345, 155
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr13:34261674-34261026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 74
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr13:34282099-34281472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 68
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr13:45353449-45352818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 67
               

               
Conread position:
               
2-412
               

               
Cow position:
               
chr13:37516722-37517133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 50
               

               
Conread position:
               
2-438
               

               
Cow position:
               
chr13:37945802-37946230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 67
               

               
Conread position:
               
2-486
               

               
Cow position:
               
chr13:49805385-49804903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 67
               

               
Conread position:
               
2-494
               

               
Cow position:
               
chr13:34375673-34375179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 51
               

               
Conread position:
               
2-495
               

               
Cow position:
               
chr13:20563409-20562912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 67
               

               
Conread position:
               
2-495
               

               
Cow position:
               
chr13:46324373-46324870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 57
               

               
Conread position:
               
2-495
               

               
Cow position:
               
chr13:59687446-59687959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
2-509
               

               
Cow position:
               
chr13:53535879-53536403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
2-510
               

               
Cow position:
               
chr13:47357031-47356555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
2-546
               

               
Cow position:
               
chr13:37483846-37484408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
2-612
               

               
Cow position:
               
chr13:20605701-20606311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 63
               

               
Conread position:
               
2-624
               

               
Cow position:
               
chr13:20175157-20174535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 67
               

               
Conread position:
               
2-624
               

               
Cow position:
               
chr13:33876081-33875470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 67
               

               
Conread position:
               
2-625
               

               
Cow position:
               
chr13:1155290-1155908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 68
               

               
Conread position:
               
2-625
               

               
Cow position:
               
chr13:30651593-30650982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 66
               

               
Conread position:
               
2-626
               

               
Cow position:
               
chr13:31808931-31808321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 167
               

               
Conread position:
               
2-629
               

               
Cow position:
               
chr13:24754308-24753686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
2-630
               

               
Cow position:
               
chr13:44626782-44626158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 42
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr13:6616330-6616972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr13:9907153-9906519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 52
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr13:15872865-15872228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 62
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr13:21235273-21235877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr13:42114428-42113806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 67
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr13:60508705-60509334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 68
               

               
Conread position:
               
3-367
               

               
Cow position:
               
chr13:4038296-4037926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 146
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chr13:60690300-60690704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 67
               

               
Conread position:
               
3-392
               

               
Cow position:
               
chr13:3003861-3003463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 66
               

               
Conread position:
               
3-441
               

               
Cow position:
               
chr13:20863605-20864043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
3-448
               

               
Cow position:
               
chr13:24059914-24060370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 66
               

               
Conread position:
               
3-460
               

               
Cow position:
               
chr13:52922518-52922049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 48
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr13:20440184-20440633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 62
               

               
Conread position:
               
3-499
               

               
Cow position:
               
chr13:46182190-46181707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 66
               

               
Conread position:
               
3-510
               

               
Cow position:
               
chr13:25434713-25435219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 22
               

               
Conread position:
               
3-510
               

               
Cow position:
               
chr13:36352572-36353053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
3-553
               

               
Cow position:
               
chr13:10928575-10929123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 67
               

               
Conread position:
               
3-568
               

               
Cow position:
               
chr13:2414441-2413881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 65
               

               
Conread position:
               
3-568
               

               
Cow position:
               
chr13:36771005-36771573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 66
               

               
Conread position:
               
3-568
               

               
Cow position:
               
chr13:51941151-51940586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
3-599
               

               
Cow position:
               
chr13:20665974-20666563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 49
               

               
Conread position:
               
3-616
               

               
Cow position:
               
chr13:34262966-34263567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 18
               

               
Conread position:
               
3-627
               

               
Cow position:
               
chr13:971479-972102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 68
               

               
Conread position:
               
3-631
               

               
Cow position:
               
chr13:6974588-6973953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 72
               

               
Conread position:
               
3-631
               

               
Cow position:
               
chr13:19882622-19883243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 66
               

               
Conread position:
               
3-631
               

               
Cow position:
               
chr13:20683709-20684360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 49
               

               
Conread position:
               
3-631
               

               
Cow position:
               
chr13:21107554-21106934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 73
               

               
Conread position:
               
3-631
               

               
Cow position:
               
chr13:40943660-40943012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 83
               

               
Conread position:
               
4-407
               

               
Cow position:
               
chr13:34333531-34333934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
4-495
               

               
Cow position:
               
chr13:36396752-36397258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 64
               

               
Conread position:
               
4-557
               

               
Cow position:
               
chr13:12990260-12989710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 53
               

               
Conread position:
               
4-621
               

               
Cow position:
               
chr13:12977971-12977379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 35
               

               
Conread position:
               
5-396
               

               
Cow position:
               
chr13:57769610-57769990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 64
               

               
Conread position:
               
5-419
               

               
Cow position:
               
chr13:19426283-19426703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 65
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr13:3701846-3701408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 64
               

               
Conread position:
               
5-452
               

               
Cow position:
               
chr13:12682126-12682584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 162
               

               
Conread position:
               
5-507
               

               
Cow position:
               
chr13:15167232-15166725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
5-509
               

               
Cow position:
               
chr13:3015752-3016268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 166
               

               
Conread position:
               
5-567
               

               
Cow position:
               
chr13:38283569-38284126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 63
               

               
Conread position:
               
5-568
               

               
Cow position:
               
chr13:17800488-17799927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 20
               

               
Conread position:
               
5-630
               

               
Cow position:
               
chr13:61976553-61977166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 47
               

               
Conread position:
               
5-631
               

               
Cow position:
               
chr13:311847-311223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 63
               

               
Conread position:
               
5-631
               

               
Cow position:
               
chr13:47007323-47007922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
5-631
               

               
Cow position:
               
chr13:52585610-52586271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 64
               

               
Conread position:
               
6-449
               

               
Cow position:
               
chr13:5752007-5752463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
6-540
               

               
Cow position:
               
chr13:57493770-57494311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 63
               

               
Conread position:
               
7-495
               

               
Cow position:
               
chr13:20649576-20650068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 5
               

               
Conread position:
               
7-622
               

               
Cow position:
               
chr13:33351963-33352565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 28
               

               
Conread position:
               
7-631
               

               
Cow position:
               
chr13:35525800-35526403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 162
               

               
Conread position:
               
8-449
               

               
Cow position:
               
chr13:18215842-18215409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 61
               

               
Conread position:
               
8-627
               

               
Cow position:
               
chr13:17820851-17821463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 52
               

               
Conread position:
               
9-401
               

               
Cow position:
               
chr13:34555937-34556323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
100, 60
               

               
Conread position:
               
9-407
               

               
Cow position:
               
chr13:14716919-14717328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
9-502
               

               
Cow position:
               
chr13:16344114-16343606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 60
               

               
Conread position:
               
9-564
               

               
Cow position:
               
chr13:60974476-60973936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 60
               

               
Conread position:
               
9-572
               

               
Cow position:
               
chr13:56686842-56686283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 61
               

               
Conread position:
               
9-624
               

               
Cow position:
               
chr13:1232060-1231440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
10-621
               

               
Cow position:
               
chr13:8609151-8609769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 47
               

               
Conread position:
               
14-599
               

               
Cow position:
               
chr13:52057944-52057381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 56
               

               
Conread position:
               
15-551
               

               
Cow position:
               
chr13:31814270-31813742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 54
               

               
Conread position:
               
16-401
               

               
Cow position:
               
chr13:20537987-20537612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 53
               

               
Conread position:
               
16-631
               

               
Cow position:
               
chr13:56154761-56155380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
18-504
               

               
Cow position:
               
chr13:46736618-46736125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
20-461
               

               
Cow position:
               
chr13:19178673-19178225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 49
               

               
Conread position:
               
20-521
               

               
Cow position:
               
chr13:661233-661749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 115
               

               
Conread position:
               
24-390
               

               
Cow position:
               
chr13:6606624-6606999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 45
               

               
Conread position:
               
29-623
               

               
Cow position:
               
chr13:52284298-52283707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 10
               

               
Conread position:
               
34-493
               

               
Cow position:
               
chr13:42860187-42860649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 36
               

               
Conread position:
               
36-630
               

               
Cow position:
               
chr13:6086517-6087122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 33
               

               
Conread position:
               
38-510
               

               
Cow position:
               
chr13:18835568-18835108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 30
               

               
Conread position:
               
40-495
               

               
Cow position:
               
chr13:40652312-40651853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 17
               

               
Conread position:
               
42-391
               

               
Cow position:
               
chr13:16270312-16269946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 5
               

               
Conread position:
               
42-615
               

               
Cow position:
               
chr13:17855750-17855174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 28
               

               
Conread position:
               
43-514
               

               
Cow position:
               
chr13:6945750-6945277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 26
               

               
Conread position:
               
44-624
               

               
Cow position:
               
chr13:20820462-20821039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 26
               

               
Conread position:
               
45-624
               

               
Cow position:
               
chr13:21708555-21708002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 9
               

               
Conread position:
               
46-631
               

               
Cow position:
               
chr13:10988700-10989283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 23
               

               
Conread position:
               
47-435
               

               
Cow position:
               
chr13:562764-563164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 22
               

               
Conread position:
               
47-624
               

               
Cow position:
               
chr13:41807139-41806574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 22
               

               
Conread position:
               
47-631
               

               
Cow position:
               
chr13:30799095-30798501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 22
               

               
Conread position:
               
48-386
               

               
Cow position:
               
chr13:1767141-1766798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 21
               

               
Conread position:
               
48-631
               

               
Cow position:
               
chr13:1170840-1170249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
48-631
               

               
Cow position:
               
chr13:38330004-38329409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 21
               

               
Conread position:
               
49-631
               

               
Cow position:
               
chr13:13321147-13320588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 20
               

               
Conread position:
               
51-631
               

               
Cow position:
               
chr13:17158495-17159091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
54-557
               

               
Cow position:
               
chr13:53566950-53566464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 15
               

               
Conread position:
               
54-631
               

               
Cow position:
               
chr13:12875618-12876185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
60-508
               

               
Cow position:
               
chr13:23269853-23270299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 12
               

               
Conread position:
               
61-495
               

               
Cow position:
               
chr13:32949647-32950073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 8
               

               
Conread position:
               
61-562
               

               
Cow position:
               
chr13:1042597-1043119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 8
               

               
Conread position:
               
61-631
               

               
Cow position:
               
chr13:21276215-21275647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 8
               

               
Conread position:
               
62-481
               

               
Cow position:
               
chr13:62273569-62273179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
205, 7
               

               
Conread position:
               
62-552
               

               
Cow position:
               
chr13:11820935-11820465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
63-493
               

               
Cow position:
               
chr13:32717514-32717944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 48
               

               
Conread position:
               
63-631
               

               
Cow position:
               
chr13:152301-151761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 107
               

               
Conread position:
               
64-493
               

               
Cow position:
               
chr13:15958974-15958535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 66
               

               
Conread position:
               
67-493
               

               
Cow position:
               
chr13:46458990-46458544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 140
               

               
Conread position:
               
69-513
               

               
Cow position:
               
chr13:21175971-21176420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 81
               

               
Conread position:
               
70-418
               

               
Cow position:
               
chr13:61547652-61547997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
101, 71
               

               
Conread position:
               
71-631
               

               
Cow position:
               
chr13:15288582-15289128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 66
               

               
Conread position:
               
72-495
               

               
Cow position:
               
chr13:17613695-17613259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 98
               

               
Conread position:
               
72-504
               

               
Cow position:
               
chr13:33282377-33281916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
98, 78
               

               
Conread position:
               
74-420
               

               
Cow position:
               
chr13:42690355-42690013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
78-631
               

               
Cow position:
               
chr13:2774461-2773906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 78
               

               
Conread position:
               
79-493
               

               
Cow position:
               
chr13:889842-890248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 77
               

               
Conread position:
               
81-495
               

               
Cow position:
               
chr13:45604072-45604497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 272
               

               
Conread position:
               
81-508
               

               
Cow position:
               
chr13:6153439-6153878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 88
               

               
Conread position:
               
81-597
               

               
Cow position:
               
chr13:12448648-12449165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 144
               

               
Conread position:
               
81-631
               

               
Cow position:
               
chr13:32017183-32017725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 88
               

               
Conread position:
               
82-631
               

               
Cow position:
               
chr13:28139885-28139372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 87
               

               
Conread position:
               
83-631
               

               
Cow position:
               
chr13:6189293-6189809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 87
               

               
Conread position:
               
84-388
               

               
Cow position:
               
chr13:48627079-48626782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
185, 72
               

               
Conread position:
               
84-495
               

               
Cow position:
               
chr13:34508213-34507805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 85
               

               
Conread position:
               
87-498
               

               
Cow position:
               
chr13:4208484-4208897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
163, 69
               

               
Conread position:
               
87-566
               

               
Cow position:
               
chr13:37981418-37981893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 123
               

               
Conread position:
               
87-627
               

               
Cow position:
               
chr13:11260584-11260072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
88-392
               

               
Cow position:
               
chr13:37980318-37980616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
179, 81
               

               
Conread position:
               
90-510
               

               
Cow position:
               
chr13:17622615-17622192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 79
               

               
Conread position:
               
90-631
               

               
Cow position:
               
chr13:46525110-46525638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
91-375
               

               
Cow position:
               
chr13:38485148-38484870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
179, 33
               

               
Conread position:
               
91-411
               

               
Cow position:
               
chr13:6498923-6498602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
79, 160
               

               
Conread position:
               
94-387
               

               
Cow position:
               
chr13:49283015-49283323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 131
               

               
Conread position:
               
95-490
               

               
Cow position:
               
chr13:21039277-21039675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 68
               

               
Conread position:
               
96-409
               

               
Cow position:
               
chr13:15172084-15172407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 74
               

               
Conread position:
               
96-462
               

               
Cow position:
               
chr13:5091337-5091717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 44
               

               
Conread position:
               
96-615
               

               
Cow position:
               
chr13:2884375-2883864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
97-631
               

               
Cow position:
               
chr13:40491567-40491008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
77, 65
               

               
Conread position:
               
101-461
               

               
Cow position:
               
chr13:20683266-20682902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 69
               

               
Conread position:
               
102-627
               

               
Cow position:
               
chr13:27524943-27525464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 67
               

               
Conread position:
               
103-631
               

               
Cow position:
               
chr13:17291816-17292337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 53
               

               
Conread position:
               
103-631
               

               
Cow position:
               
chr13:26479899-26480412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 53
               

               
Conread position:
               
105-509
               

               
Cow position:
               
chr13:34761989-34761586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
103, 50
               

               
Conread position:
               
106-445
               

               
Cow position:
               
chr13:55843799-55843448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 66
               

               
Conread position:
               
108-568
               

               
Cow position:
               
chr13:37382124-37381651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 61
               

               
Conread position:
               
109-442
               

               
Cow position:
               
chr13:25261480-25261840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 208
               

               
Conread position:
               
109-569
               

               
Cow position:
               
chr13:56148852-56148372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
109-569
               

               
Cow position:
               
chr13:56160115-56160595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
110-631
               

               
Cow position:
               
chr13:20270910-20271440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 45
               

               
Conread position:
               
111-495
               

               
Cow position:
               
chr13:13306412-13306015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 21
               

               
Conread position:
               
111-510
               

               
Cow position:
               
chr13:20816620-20816227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 45
               

               
Conread position:
               
111-615
               

               
Cow position:
               
chr13:20813973-20814467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 45
               

               
Conread position:
               
113-510
               

               
Cow position:
               
chr13:15234214-15233830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 37
               

               
Conread position:
               
114-627
               

               
Cow position:
               
chr13:17977641-17977137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 200
               

               
Conread position:
               
115-606
               

               
Cow position:
               
chr13:14927543-14927078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 54
               

               
Conread position:
               
115-631
               

               
Cow position:
               
chr13:13089329-13088823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 54
               

               
Conread position:
               
118-410
               

               
Cow position:
               
chr13:23460334-23460634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
103, 51
               

               
Conread position:
               
119-403
               

               
Cow position:
               
chr13:34113229-34113520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
120-597
               

               
Cow position:
               
chr13:47756675-47756184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
89, 49
               

               
Conread position:
               
121-631
               

               
Cow position:
               
chr13:25817813-25817320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
128-570
               

               
Cow position:
               
chr13:51821595-51822024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
128-624
               

               
Cow position:
               
chr13:38872682-38873159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 26
               

               
Conread position:
               
130-495
               

               
Cow position:
               
chr13:18989996-18989641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
132-624
               

               
Cow position:
               
chr13:12574923-12574426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 37
               

               
Conread position:
               
141-627
               

               
Cow position:
               
chr13:18852352-18851883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
142-612
               

               
Cow position:
               
chr13:61047485-61047020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 27
               

               
Conread position:
               
144-631
               

               
Cow position:
               
chr13:33256773-33256288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
145-386
               

               
Cow position:
               
chr13:24539768-24539519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
145-402
               

               
Cow position:
               
chr13:52097899-52097635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
145-495
               

               
Cow position:
               
chr13:12614537-12614172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
145-631
               

               
Cow position:
               
chr13:6079143-6079612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 24
               

               
Conread position:
               
145-631
               

               
Cow position:
               
chr13:19393559-19393087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
146-509
               

               
Cow position:
               
chr13:18244129-18243767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 5
               

               
Conread position:
               
146-562
               

               
Cow position:
               
chr13:45726154-45725744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
174, 23
               

               
Conread position:
               
148-502
               

               
Cow position:
               
chr13:62618081-62617734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
149-631
               

               
Cow position:
               
chr13:19023567-19024061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
154-631
               

               
Cow position:
               
chr13:17021454-17021935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 5
               

               
Conread position:
               
156-486
               

               
Cow position:
               
chr13:55295361-55295698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 13
               

               
Conread position:
               
156-624
               

               
Cow position:
               
chr13:15041207-15041677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
156-631
               

               
Cow position:
               
chr13:54702455-54701972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 13
               

               
Conread position:
               
158-630
               

               
Cow position:
               
chr13:18166993-18166524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
159-624
               

               
Cow position:
               
chr13:22115967-22115473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
160-625
               

               
Cow position:
               
chr13:54381674-54382127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
160-631
               

               
Cow position:
               
chr13:21287829-21288294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
161-631
               

               
Cow position:
               
chr13:57002999-57002513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
162-493
               

               
Cow position:
               
chr13:54969563-54969879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 47
               

               
Conread position:
               
163-496
               

               
Cow position:
               
chr13:11061243-11060906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
163-540
               

               
Cow position:
               
chr13:8524361-8524747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 178
               

               
Conread position:
               
163-627
               

               
Cow position:
               
chr13:53574216-53573773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
104, 44
               

               
Conread position:
               
165-631
               

               
Cow position:
               
chr13:44323160-44322683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 204
               

               
Conread position:
               
169-409
               

               
Cow position:
               
chr13:8607265-8607514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
169-419
               

               
Cow position:
               
chr13:1839633-1839382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
71, 39
               

               
Conread position:
               
169-428
               

               
Cow position:
               
chr13:21210115-21209853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
24, 18
               

               
Conread position:
               
169-466
               

               
Cow position:
               
chr13:1780088-1779777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
13, 252
               

               
Conread position:
               
169-509
               

               
Cow position:
               
chr13:54095057-54094715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
119, 49
               

               
Conread position:
               
169-510
               

               
Cow position:
               
chr13:60650667-60651001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
169-548
               

               
Cow position:
               
chr13:20839822-20839436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
25, 255
               

               
Conread position:
               
169-552
               

               
Cow position:
               
chr13:48037873-48037491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 302
               

               
Conread position:
               
169-623
               

               
Cow position:
               
chr13:8195334-8194895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
169-628
               

               
Cow position:
               
chr13:26261541-26261998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 238
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr13:20784841-20784385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 178
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr13:45022955-45023432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 30
               

               
Conread position:
               
170-386
               

               
Cow position:
               
chr13:46501556-46501329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
170-442
               

               
Cow position:
               
chr13:5713546-5713275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 118
               

               
Conread position:
               
170-471
               

               
Cow position:
               
chr13:30693953-30693657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 176
               

               
Conread position:
               
170-504
               

               
Cow position:
               
chr13:29631104-29630767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
170-504
               

               
Cow position:
               
chr13:52285067-52284725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 255
               

               
Conread position:
               
170-509
               

               
Cow position:
               
chr13:11954863-11955212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 21
               

               
Conread position:
               
170-522
               

               
Cow position:
               
chr13:33631372-33631021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 156
               

               
Conread position:
               
170-599
               

               
Cow position:
               
chr13:23479281-23478851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 139
               

               
Conread position:
               
170-606
               

               
Cow position:
               
chr13:23166845-23167305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 266
               

               
Conread position:
               
170-624
               

               
Cow position:
               
chr13:43594864-43595307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 121
               

               
Conread position:
               
170-627
               

               
Cow position:
               
chr13:3315421-3315891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 144
               

               
Conread position:
               
170-627
               

               
Cow position:
               
chr13:14063276-14063726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 39
               

               
Conread position:
               
170-631
               

               
Cow position:
               
chr13:4664609-4665059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 160
               

               
Conread position:
               
170-631
               

               
Cow position:
               
chr13:48251740-48252177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
40, 98
               

               
Conread position:
               
171-487
               

               
Cow position:
               
chr13:29814791-29814466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
171-631
               

               
Cow position:
               
chr13:57475169-57475626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
26, 5
               

               
Conread position:
               
172-452
               

               
Cow position:
               
chr13:52879660-52879374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
172-510
               

               
Cow position:
               
chr13:43184621-43184977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
172-629
               

               
Cow position:
               
chr13:23960556-23961014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 237
               

               
Conread position:
               
172-631
               

               
Cow position:
               
chr13:25927042-25926579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 205
               

               
Conread position:
               
172-631
               

               
Cow position:
               
chr13:35660003-35659545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 225
               

               
Conread position:
               
172-631
               

               
Cow position:
               
chr13:42200868-42200411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 346
               

               
Conread position:
               
173-380
               

               
Cow position:
               
chr13:22025449-22025675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
173-412
               

               
Cow position:
               
chr13:38012610-38012357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 217
               

               
Conread position:
               
173-440
               

               
Cow position:
               
chr13:52199338-52199060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
173-499
               

               
Cow position:
               
chr13:61166208-61166535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
173-630
               

               
Cow position:
               
chr13:24715486-24715041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 35
               

               
Conread position:
               
173-631
               

               
Cow position:
               
chr13:19364493-19364035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
37, 249
               

               
Conread position:
               
174-509
               

               
Cow position:
               
chr13:15884766-15885117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 246
               

               
Conread position:
               
174-555
               

               
Cow position:
               
chr13:11460871-11460495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
174-555
               

               
Cow position:
               
chr13:13501374-13501752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
174-623
               

               
Cow position:
               
chr13:15974858-15974417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
35, 205
               

               
Conread position:
               
174-630
               

               
Cow position:
               
chr13:37069597-37069133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 211
               

               
Conread position:
               
175-471
               

               
Cow position:
               
chr13:37521133-37521433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 227
               

               
Conread position:
               
175-624
               

               
Cow position:
               
chr13:60599695-60600138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
176-568
               

               
Cow position:
               
chr13:23856461-23856063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 275
               

               
Conread position:
               
177-493
               

               
Cow position:
               
chr13:47863454-47863782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
177-624
               

               
Cow position:
               
chr13:15622052-15621607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
177-631
               

               
Cow position:
               
chr13:43480306-43479853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 229
               

               
Conread position:
               
178-390
               

               
Cow position:
               
chr13:21904903-21904686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
178-418
               

               
Cow position:
               
chr13:54418476-54418226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 218
               

               
Conread position:
               
178-478
               

               
Cow position:
               
chr13:16024832-16024525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 233
               

               
Conread position:
               
178-495
               

               
Cow position:
               
chr13:54345021-54344699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
30, 231
               

               
Conread position:
               
178-621
               

               
Cow position:
               
chr13:11808786-11808382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 42
               

               
Conread position:
               
178-624
               

               
Cow position:
               
chr13:5278944-5279409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
26, 354
               

               
Conread position:
               
178-631
               

               
Cow position:
               
chr13:20880682-20881130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 320
               

               
Conread position:
               
178-631
               

               
Cow position:
               
chr13:21241848-21242285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 37
               

               
Conread position:
               
179-395
               

               
Cow position:
               
chr13:24776534-24776301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
31, 167
               

               
Conread position:
               
179-486
               

               
Cow position:
               
chr13:24376733-24376421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 122
               

               
Conread position:
               
179-567
               

               
Cow position:
               
chr13:20705960-20706352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 237
               

               
Conread position:
               
179-631
               

               
Cow position:
               
chr13:41154803-41155264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
180-486
               

               
Cow position:
               
chr13:46636889-46637195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 144
               

               
Conread position:
               
180-493
               

               
Cow position:
               
chr13:1959251-1958928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
42, 167
               

               
Conread position:
               
180-509
               

               
Cow position:
               
chr13:22886750-22887084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
34, 176
               

               
Conread position:
               
180-630
               

               
Cow position:
               
chr13:17114138-17114589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 58
               

               
Conread position:
               
180-631
               

               
Cow position:
               
chr13:37774987-37775415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
183-423
               

               
Cow position:
               
chr13:43839308-43839552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
184-631
               

               
Cow position:
               
chr13:19033785-19033346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 94
               

               
Conread position:
               
185-421
               

               
Cow position:
               
chr13:2339666-2339429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
83, 159
               

               
Conread position:
               
185-471
               

               
Cow position:
               
chr13:30510298-30509999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 150
               

               
Conread position:
               
185-509
               

               
Cow position:
               
chr13:20466058-20466380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
157, 24
               

               
Conread position:
               
185-554
               

               
Cow position:
               
chr13:13176886-13176513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 115
               

               
Conread position:
               
185-627
               

               
Cow position:
               
chr13:19610342-19610769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
186-410
               

               
Cow position:
               
chr13:17816007-17815774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
186-480
               

               
Cow position:
               
chr13:2462995-2463301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
186-564
               

               
Cow position:
               
chr13:55315953-55316341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 216
               

               
Conread position:
               
186-624
               

               
Cow position:
               
chr13:23667498-23667055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 145
               

               
Conread position:
               
186-631
               

               
Cow position:
               
chr13:7076492-7076031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 112
               

               
Conread position:
               
187-404
               

               
Cow position:
               
chr13:18551683-18551454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
187-631
               

               
Cow position:
               
chr13:10924671-10925132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
187-631
               

               
Cow position:
               
chr13:17745473-17745049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 159
               

               
Conread position:
               
187-631
               

               
Cow position:
               
chr13:55673970-55674419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 211
               

               
Conread position:
               
188-576
               

               
Cow position:
               
chr13:20679580-20679179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
190-443
               

               
Cow position:
               
chr13:54093972-54093716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
20, 115
               

               
Conread position:
               
190-622
               

               
Cow position:
               
chr13:24369817-24369385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 215
               

               
Conread position:
               
190-624
               

               
Cow position:
               
chr13:47963969-47964385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 61
               

               
Conread position:
               
191-426
               

               
Cow position:
               
chr13:9884999-9884756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 156
               

               
Conread position:
               
191-509
               

               
Cow position:
               
chr13:32657575-32657895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
191-510
               

               
Cow position:
               
chr13:6060777-6061104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 190
               

               
Conread position:
               
192-625
               

               
Cow position:
               
chr13:12207273-12206858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
18, 216
               

               
Conread position:
               
193-566
               

               
Cow position:
               
chr13:11096401-11096036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
17, 101
               

               
Conread position:
               
194-631
               

               
Cow position:
               
chr13:52749260-52749672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
196-610
               

               
Cow position:
               
chr13:17004367-17004788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 169
               

               
Conread position:
               
197-568
               

               
Cow position:
               
chr13:17439541-17439916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 209
               

               
Conread position:
               
197-630
               

               
Cow position:
               
chr13:15192669-15193096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 205
               

               
Conread position:
               
198-392
               

               
Cow position:
               
chr13:48944885-48944692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
198-623
               

               
Cow position:
               
chr13:37818536-37818945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
199-552
               

               
Cow position:
               
chr13:12202587-12202226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 99
               

               
Conread position:
               
199-568
               

               
Cow position:
               
chr13:15281715-15282082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
60, 21
               

               
Conread position:
               
199-568
               

               
Cow position:
               
chr13:18172561-18172188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 9
               

               
Conread position:
               
200-510
               

               
Cow position:
               
chr13:43868896-43869209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 132
               

               
Conread position:
               
200-624
               

               
Cow position:
               
chr13:7059696-7059256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
61, 355
               

               
Conread position:
               
200-631
               

               
Cow position:
               
chr13:10845815-10845409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
10, 128
               

               
Conread position:
               
201-486
               

               
Cow position:
               
chr13:37795655-37795386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
201-496
               

               
Cow position:
               
chr13:60329971-60329677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 91
               

               
Conread position:
               
201-504
               

               
Cow position:
               
chr13:61990112-61990415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 209
               

               
Conread position:
               
201-625
               

               
Cow position:
               
chr13:5263065-5263482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 159
               

               
Conread position:
               
202-631
               

               
Cow position:
               
chr13:36877291-36876856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 170
               

               
Conread position:
               
203-556
               

               
Cow position:
               
chr13:9643667-9644028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
204-623
               

               
Cow position:
               
chr13:48165210-48165624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 151
               

               
Conread position:
               
205-476
               

               
Cow position:
               
chr13:2192924-2192649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
62, 82
               

               
Conread position:
               
208-495
               

               
Cow position:
               
chr13:52227887-52228181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
52, 191
               

               
Conread position:
               
208-495
               

               
Cow position:
               
chr13:53195079-53195362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 193
               

               
Conread position:
               
208-616
               

               
Cow position:
               
chr13:51014967-51015378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 191
               

               
Conread position:
               
208-625
               

               
Cow position:
               
chr13:37521519-37521952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
32, 187
               

               
Conread position:
               
208-631
               

               
Cow position:
               
chr13:15257165-15257576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 118
               

               
Conread position:
               
209-495
               

               
Cow position:
               
chr13:60341026-60340725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
52, 181
               

               
Conread position:
               
215-507
               

               
Cow position:
               
chr13:9593713-9593412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
220-624
               

               
Cow position:
               
chr13:20509933-20509525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
220-624
               

               
Cow position:
               
chr13:48598105-48597707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
220-631
               

               
Cow position:
               
chr13:19022479-19022055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 184
               

               
Conread position:
               
220-631
               

               
Cow position:
               
chr13:37592737-37593155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
47, 304
               

               
Conread position:
               
221-624
               

               
Cow position:
               
chr13:46112167-46111766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
221-631
               

               
Cow position:
               
chr13:24230413-24230001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 184
               

               
Conread position:
               
236-631
               

               
Cow position:
               
chr13:5671416-5671795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 35
               

               
Conread position:
               
241-476
               

               
Cow position:
               
chr13:10098816-10099050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
100, 140
               

               
Conread position:
               
241-631
               

               
Cow position:
               
chr13:17568925-17569306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 22
               

               
Conread position:
               
245-494
               

               
Cow position:
               
chr13:52929876-52929631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
245-510
               

               
Cow position:
               
chr13:5758169-5758438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
245-631
               

               
Cow position:
               
chr13:15195033-15195410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
83, 161
               

               
Conread position:
               
251-568
               

               
Cow position:
               
chr13:37640751-37640430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
63, 151
               

               
Conread position:
               
253-495
               

               
Cow position:
               
chr13:30662167-30661924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 83
               

               
Conread position:
               
259-507
               

               
Cow position:
               
chr13:15528875-15529130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
259-624
               

               
Cow position:
               
chr13:15991069-15991433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 179
               

               
Conread position:
               
260-388
               

               
Cow position:
               
chr13:24767541-24767411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
260-392
               

               
Cow position:
               
chr13:2302685-2302819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
260-397
               

               
Cow position:
               
chr13:21189433-21189295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
80, 73
               

               
Conread position:
               
260-402
               

               
Cow position:
               
chr13:39699960-39699818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
128, 86
               

               
Conread position:
               
260-406
               

               
Cow position:
               
chr13:26291301-26291450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
260-443
               

               
Cow position:
               
chr13:62474647-62474828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
143, 77
               

               
Conread position:
               
260-455
               

               
Cow position:
               
chr13:61162805-61162602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 154
               

               
Conread position:
               
260-456
               

               
Cow position:
               
chr13:7790170-7789965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
81, 63
               

               
Conread position:
               
260-462
               

               
Cow position:
               
chr13:4423327-4423536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 205
               

               
Conread position:
               
260-480
               

               
Cow position:
               
chr13:56605318-56605544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
260-487
               

               
Cow position:
               
chr13:12618957-12619188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 148
               

               
Conread position:
               
260-495
               

               
Cow position:
               
chr13:7488695-7488460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 100
               

               
Conread position:
               
260-495
               

               
Cow position:
               
chr13:28689622-28689386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
260-495
               

               
Cow position:
               
chr13:49507693-49507931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
55, 156
               

               
Conread position:
               
260-508
               

               
Cow position:
               
chr13:8652282-8652537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 38
               

               
Conread position:
               
260-509
               

               
Cow position:
               
chr13:17346959-17346715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
260-510
               

               
Cow position:
               
chr13:15110476-15110218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
260-512
               

               
Cow position:
               
chr13:27493695-27493957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 29
               

               
Conread position:
               
260-561
               

               
Cow position:
               
chr13:20231048-20231331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
60, 74
               

               
Conread position:
               
260-568
               

               
Cow position:
               
chr13:547641-547347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
55, 102
               

               
Conread position:
               
260-568
               

               
Cow position:
               
chr13:14771613-14771302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 255
               

               
Conread position:
               
260-576
               

               
Cow position:
               
chr13:5082806-5082491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 67
               

               
Conread position:
               
260-604
               

               
Cow position:
               
chr13:23651588-23651258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 97
               

               
Conread position:
               
260-623
               

               
Cow position:
               
chr13:607109-607464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
59, 153
               

               
Conread position:
               
260-623
               

               
Cow position:
               
chr13:13954232-13954597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
59, 134
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr13:6849086-6848722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
59, 132
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr13:13339016-13338656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 149
               

               
Conread position:
               
260-626
               

               
Cow position:
               
chr13:25604470-25604810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
54, 140
               

               
Conread position:
               
260-627
               

               
Cow position:
               
chr13:47186380-47186025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
81, 136
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr13:9846297-9846673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
24, 158
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr13:9900305-9899937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
54, 48
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr13:19223801-19223442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
80, 141
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr13:19581931-19582290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 140
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr13:24586197-24585839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 138
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr13:25496162-25495800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 156
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr13:49022718-49023075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 81
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr13:49503376-49503747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr13:49824179-49823814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
66, 85
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr13:54583033-54582665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 229
               

               
Conread position:
               
261-470
               

               
Cow position:
               
chr13:28652954-28652747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 135
               

               
Conread position:
               
261-513
               

               
Cow position:
               
chr13:13577877-13578132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
262-495
               

               
Cow position:
               
chr13:62601159-62600926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
78, 61
               

               
Conread position:
               
262-508
               

               
Cow position:
               
chr13:50739320-50739074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
262-596
               

               
Cow position:
               
chr13:43919107-43919440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 14
               

               
Conread position:
               
262-618
               

               
Cow position:
               
chr13:55583349-55582998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
58, 24
               

               
Conread position:
               
262-627
               

               
Cow position:
               
chr13:20473537-20473880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 60
               

               
Conread position:
               
262-631
               

               
Cow position:
               
chr13:14576364-14576006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
265-449
               

               
Cow position:
               
chr13:16711781-16711592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 139
               

               
Conread position:
               
265-484
               

               
Cow position:
               
chr13:47188594-47188366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
265-619
               

               
Cow position:
               
chr13:54388870-54389215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
267-503
               

               
Cow position:
               
chr13:15903165-15902935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 74
               

               
Conread position:
               
267-631
               

               
Cow position:
               
chr13:18696991-18696614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 50
               

               
Conread position:
               
267-631
               

               
Cow position:
               
chr13:26698348-26698706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 155
               

               
Conread position:
               
269-405
               

               
Cow position:
               
chr13:20264764-20264904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
269-480
               

               
Cow position:
               
chr13:20128812-20128600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 132
               

               
Conread position:
               
269-484
               

               
Cow position:
               
chr13:53070023-53070230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 130
               

               
Conread position:
               
269-495
               

               
Cow position:
               
chr13:17451241-17451015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
269-497
               

               
Cow position:
               
chr13:13238724-13238492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 71
               

               
Conread position:
               
269-624
               

               
Cow position:
               
chr13:1363841-1363484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
50, 123
               

               
Conread position:
               
269-624
               

               
Cow position:
               
chr13:2823006-2822665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
177, 49
               

               
Conread position:
               
269-631
               

               
Cow position:
               
chr13:18999689-18999322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
54, 237
               

               
Conread position:
               
270-631
               

               
Cow position:
               
chr13:8374626-8374970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 126
               

               
Conread position:
               
271-504
               

               
Cow position:
               
chr13:56842746-56842979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
141, 62
               

               
Conread position:
               
271-507
               

               
Cow position:
               
chr13:17966064-17966302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 142
               

               
Conread position:
               
271-508
               

               
Cow position:
               
chr13:19188446-19188206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
48, 144
               

               
Conread position:
               
271-566
               

               
Cow position:
               
chr13:49520677-49520971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
70, 120
               

               
Conread position:
               
271-624
               

               
Cow position:
               
chr13:20157875-20157527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
271-627
               

               
Cow position:
               
chr13:29831288-29831632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
43, 129
               

               
Conread position:
               
271-631
               

               
Cow position:
               
chr13:18058104-18058456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
273-490
               

               
Cow position:
               
chr13:8555606-8555385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 133
               

               
Conread position:
               
273-570
               

               
Cow position:
               
chr13:11381579-11381872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 91
               

               
Conread position:
               
273-610
               

               
Cow position:
               
chr13:18973297-18973637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
275-548
               

               
Cow position:
               
chr13:48375504-48375763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
276-481
               

               
Cow position:
               
chr13:6455508-6455308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
276-631
               

               
Cow position:
               
chr13:21269440-21269790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
51, 115
               

               
Conread position:
               
277-466
               

               
Cow position:
               
chr13:32826318-32826510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
277-568
               

               
Cow position:
               
chr13:51115889-51116171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
277-628
               

               
Cow position:
               
chr13:11321477-11321821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
64, 150
               

               
Conread position:
               
279-627
               

               
Cow position:
               
chr13:20288466-20288133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
282-498
               

               
Cow position:
               
chr13:12745805-12745588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
105, 62
               

               
Conread position:
               
282-621
               

               
Cow position:
               
chr13:25579053-25579394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
38, 231
               

               
Conread position:
               
282-624
               

               
Cow position:
               
chr13:14878818-14879157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
36, 54
               

               
Conread position:
               
285-627
               

               
Cow position:
               
chr13:58763501-58763814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
286-440
               

               
Cow position:
               
chr13:6389510-6389355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 111
               

               
Conread position:
               
286-616
               

               
Cow position:
               
chr13:39232702-39233021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 106
               

               
Conread position:
               
286-631
               

               
Cow position:
               
chr13:25381092-25380735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr13:15144245-15144456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
289-568
               

               
Cow position:
               
chr13:11591873-11591599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
289-631
               

               
Cow position:
               
chr13:20217261-20217607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 236
               

               
Conread position:
               
292-481
               

               
Cow position:
               
chr13:626684-626490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
292-499
               

               
Cow position:
               
chr13:2803593-2803387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
22, 59
               

               
Conread position:
               
292-510
               

               
Cow position:
               
chr13:15945602-15945385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
292-631
               

               
Cow position:
               
chr13:11202156-11201829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 100
               

               
Conread position:
               
292-631
               

               
Cow position:
               
chr13:39826677-39826346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 124
               

               
Conread position:
               
293-496
               

               
Cow position:
               
chr13:50713325-50713128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
22, 102
               

               
Conread position:
               
293-623
               

               
Cow position:
               
chr13:5910773-5911092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 146
               

               
Conread position:
               
293-623
               

               
Cow position:
               
chr13:17338561-17338224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
26, 99
               

               
Conread position:
               
293-631
               

               
Cow position:
               
chr13:1569046-1568725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
48, 143
               

               
Conread position:
               
293-631
               

               
Cow position:
               
chr13:60375365-60375697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 167
               

               
Conread position:
               
294-510
               

               
Cow position:
               
chr13:62518210-62518426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
295-510
               

               
Cow position:
               
chr13:34555711-34555924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
297-620
               

               
Cow position:
               
chr13:15194613-15194919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 219
               

               
Conread position:
               
297-621
               

               
Cow position:
               
chr13:18995247-18994923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 173
               

               
Conread position:
               
297-630
               

               
Cow position:
               
chr13:19279209-19278887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 7
               

               
Conread position:
               
298-624
               

               
Cow position:
               
chr13:5060863-5060536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
18, 103
               

               
Conread position:
               
298-625
               

               
Cow position:
               
chr13:27550857-27550532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
21, 42
               

               
Conread position:
               
298-628
               

               
Cow position:
               
chr13:18929649-18929319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 83
               

               
Conread position:
               
298-631
               

               
Cow position:
               
chr13:21135782-21136121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 98
               

               
Conread position:
               
300-495
               

               
Cow position:
               
chr13:20357777-20357974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 114
               

               
Conread position:
               
301-496
               

               
Cow position:
               
chr13:51901703-51901502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
302-509
               

               
Cow position:
               
chr13:22075787-22075576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
302-540
               

               
Cow position:
               
chr13:56678129-56677893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 180
               

               
Conread position:
               
302-554
               

               
Cow position:
               
chr13:8402169-8401921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
305-573
               

               
Cow position:
               
chr13:19320646-19320377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 209
               

               
Conread position:
               
305-623
               

               
Cow position:
               
chr13:49476199-49475870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
305-631
               

               
Cow position:
               
chr13:10221060-10220748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 42
               

               
Conread position:
               
306-631
               

               
Cow position:
               
chr13:14967105-14967424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 86
               

               
Conread position:
               
309-576
               

               
Cow position:
               
chr13:55728006-55727742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
309-631
               

               
Cow position:
               
chr13:20155107-20154785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
310-565
               

               
Cow position:
               
chr13:3989308-3989059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
311-623
               

               
Cow position:
               
chr13:12974907-12974614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
311-631
               

               
Cow position:
               
chr13:7265020-7265315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
311-631
               

               
Cow position:
               
chr13:8355302-8354969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
104, 30
               

               
Conread position:
               
312-631
               

               
Cow position:
               
chr13:46044260-46043965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
313-557
               

               
Cow position:
               
chr13:47022462-47022227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
313-624
               

               
Cow position:
               
chr13:4158766-4158457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 203
               

               
Conread position:
               
313-627
               

               
Cow position:
               
chr13:46329501-46329808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 207
               

               
Conread position:
               
313-631
               

               
Cow position:
               
chr13:16038191-16038492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
28, 6
               

               
Conread position:
               
313-631
               

               
Cow position:
               
chr13:54128491-54128807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
25, 6
               

               
Conread position:
               
315-624
               

               
Cow position:
               
chr13:15659377-15659073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
315-631
               

               
Cow position:
               
chr13:16714161-16714475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
26, 151
               

               
Conread position:
               
315-631
               

               
Cow position:
               
chr13:52880784-52881093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
201, 75
               

               
Conread position:
               
316-563
               

               
Cow position:
               
chr13:50568317-50568549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 80
               

               
Conread position:
               
319-626
               

               
Cow position:
               
chr13:7332903-7333216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 209
               

               
Conread position:
               
319-631
               

               
Cow position:
               
chr13:25978094-25978403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
18, 197
               

               
Conread position:
               
321-624
               

               
Cow position:
               
chr13:18197508-18197810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 120
               

               
Conread position:
               
321-631
               

               
Cow position:
               
chr13:52477550-52477854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
5, 131
               

               
Conread position:
               
322-568
               

               
Cow position:
               
chr13:13297768-13297531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 182
               

               
Conread position:
               
322-576
               

               
Cow position:
               
chr13:23526203-23525956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
323-602
               

               
Cow position:
               
chr13:15964411-15964118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 147
               

               
Conread position:
               
324-495
               

               
Cow position:
               
chr13:9385936-9386102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 75
               

               
Conread position:
               
324-625
               

               
Cow position:
               
chr13:13196329-13196038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
324-631
               

               
Cow position:
               
chr13:15239429-15239721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
325-569
               

               
Cow position:
               
chr13:3211642-3211401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
21, 187
               

               
Conread position:
               
325-586
               

               
Cow position:
               
chr13:50750963-50751224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 187
               

               
Conread position:
               
325-624
               

               
Cow position:
               
chr13:56034768-56035059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
326-631
               

               
Cow position:
               
chr13:45073167-45073455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
327-496
               

               
Cow position:
               
chr13:20871478-20871302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
327-630
               

               
Cow position:
               
chr13:21170616-21170320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
338-517
               

               
Cow position:
               
chr13:48862020-48862198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
339-510
               

               
Cow position:
               
chr13:18005747-18005577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
77, 48
               

               
Conread position:
               
339-621
               

               
Cow position:
               
chr13:19778774-19779054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 62
               

               
Conread position:
               
339-623
               

               
Cow position:
               
chr13:28291400-28291119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 162
               

               
Conread position:
               
339-626
               

               
Cow position:
               
chr13:20868681-20868950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
339-630
               

               
Cow position:
               
chr13:20137899-20137609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
63, 180
               

               
Conread position:
               
339-631
               

               
Cow position:
               
chr13:7149303-7149028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
339-631
               

               
Cow position:
               
chr13:18299477-18299185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 16
               

               
Conread position:
               
340-555
               

               
Cow position:
               
chr13:827316-827111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
340-569
               

               
Cow position:
               
chr13:9981767-9981992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
72, 112
               

               
Conread position:
               
340-630
               

               
Cow position:
               
chr13:39939493-39939774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 107
               

               
Conread position:
               
344-623
               

               
Cow position:
               
chr13:19876258-19876538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
6, 64
               

               
Conread position:
               
344-631
               

               
Cow position:
               
chr13:15757190-15756907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 57
               

               
Conread position:
               
344-631
               

               
Cow position:
               
chr13:42672352-42672639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
345-624
               

               
Cow position:
               
chr13:6861251-6860973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 60
               

               
Conread position:
               
345-631
               

               
Cow position:
               
chr13:55162280-55162001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 52
               

               
Conread position:
               
346-507
               

               
Cow position:
               
chr13:29123373-29123211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
346-597
               

               
Cow position:
               
chr13:16160485-16160245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 27
               

               
Conread position:
               
349-612
               

               
Cow position:
               
chr13:13211951-13211698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
62, 28
               

               
Conread position:
               
350-627
               

               
Cow position:
               
chr13:20314555-20314830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 166
               

               
Conread position:
               
350-631
               

               
Cow position:
               
chr13:20115317-20115035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 62
               

               
Conread position:
               
350-631
               

               
Cow position:
               
chr13:62008176-62007898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
46, 163
               

               
Conread position:
               
354-629
               

               
Cow position:
               
chr13:11103131-11103415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
355-540
               

               
Cow position:
               
chr13:18181714-18181897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
355-626
               

               
Cow position:
               
chr13:17822892-17823154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 105
               

               
Conread position:
               
355-630
               

               
Cow position:
               
chr13:35557046-35557319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 163
               

               
Conread position:
               
356-631
               

               
Cow position:
               
chr13:20534953-20534691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
359-631
               

               
Cow position:
               
chr13:19007987-19007734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
54, 106
               

               
Conread position:
               
359-631
               

               
Cow position:
               
chr13:41549732-41550013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
361-631
               

               
Cow position:
               
chr13:1147098-1147360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
361-631
               

               
Cow position:
               
chr13:17089470-17089722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
362-612
               

               
Cow position:
               
chr13:26720732-26720979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 44
               

               
Conread position:
               
363-558
               

               
Cow position:
               
chr13:8478454-8478265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
364-625
               

               
Cow position:
               
chr13:17611500-17611754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
49, 144
               

               
Conread position:
               
364-631
               

               
Cow position:
               
chr13:21171522-21171781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
40, 30
               

               
Conread position:
               
364-631
               

               
Cow position:
               
chr13:52640900-52641160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
370-627
               

               
Cow position:
               
chr13:29663074-29662813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
371-630
               

               
Cow position:
               
chr13:28440492-28440741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
371-631
               

               
Cow position:
               
chr13:55494477-55494728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
20, 146
               

               
Conread position:
               
375-631
               

               
Cow position:
               
chr13:40541067-40541318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
378-631
               

               
Cow position:
               
chr13:38035872-38035630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
384-621
               

               
Cow position:
               
chr13:15083688-15083462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
386-631
               

               
Cow position:
               
chr13:43525205-43525458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
29, 246
               

               
Conread position:
               
390-625
               

               
Cow position:
               
chr13:57985915-57986135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
393-631
               

               
Cow position:
               
chr13:2776305-2776075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
393-631
               

               
Cow position:
               
chr13:15993410-15993174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
8, 116
               

               
Conread position:
               
394-623
               

               
Cow position:
               
chr13:6926536-6926311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
158, 18
               

               
Conread position:
               
396-624
               

               
Cow position:
               
chr13:18340552-18340328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 115
               

               
Conread position:
               
397-631
               

               
Cow position:
               
chr13:37614171-37614407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
9, 123
               

               
Conread position:
               
399-631
               

               
Cow position:
               
chr13:13775227-13775462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 119
               

               
Conread position:
               
401-630
               

               
Cow position:
               
chr13:3209306-3209546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 215
               

               
Conread position:
               
401-631
               

               
Cow position:
               
chr13:21980961-21981179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
404-631
               

               
Cow position:
               
chr13:9707737-9707956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 100
               

               
Conread position:
               
405-627
               

               
Cow position:
               
chr13:1462290-1462497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
408-631
               

               
Cow position:
               
chr13:47243547-47243761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
7, 48
               

               
Conread position:
               
412-629
               

               
Cow position:
               
chr13:14645053-14644846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
53, 34
               

               
Conread position:
               
414-630
               

               
Cow position:
               
chr13:15061481-15061698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 136
               

               
Conread position:
               
414-631
               

               
Cow position:
               
chr13:8450330-8450124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
83, 88
               

               
Conread position:
               
414-631
               

               
Cow position:
               
chr13:19598665-19598874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
420-631
               

               
Cow position:
               
chr13:8699743-8699952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
425-631
               

               
Cow position:
               
chr13:11565825-11565630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
425-631
               

               
Cow position:
               
chr13:57770000-57770192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
427-630
               

               
Cow position:
               
chr13:53850811-53850612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
125, 86
               

               
Conread position:
               
427-631
               

               
Cow position:
               
chr13:49283793-49283987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
428-631
               

               
Cow position:
               
chr13:33854698-33854890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
429-631
               

               
Cow position:
               
chr13:51249395-51249586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
434-624
               

               
Cow position:
               
chr13:31507464-31507644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
167, 69
               

               
Conread position:
               
434-624
               

               
Cow position:
               
chr13:52913853-52913674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
434-631
               

               
Cow position:
               
chr13:37554894-37555080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
437-631
               

               
Cow position:
               
chr13:3153727-3153538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
440-631
               

               
Cow position:
               
chr13:16099147-16099338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
112, 77
               

               
Conread position:
               
446-630
               

               
Cow position:
               
chr13:16525255-16525436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
104, 46
               

               
Conread position:
               
451-631
               

               
Cow position:
               
chr13:13265524-13265355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
455-631
               

               
Cow position:
               
chr13:43342526-43342358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
456-631
               

               
Cow position:
               
chr13:28081680-28081507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
100, 56
               

               
Conread position:
               
458-626
               

               
Cow position:
               
chr13:43576970-43576806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
464-630
               

               
Cow position:
               
chr13:23823084-23823238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
464-631
               

               
Cow position:
               
chr13:53619954-53619791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
107, 48
               

               
Conread position:
               
465-624
               

               
Cow position:
               
chr13:20520264-20520108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
465-630
               

               
Cow position:
               
chr13:23399715-23399558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
469-631
               

               
Cow position:
               
chr13:23478847-23478691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
475-631
               

               
Cow position:
               
chr13:25313210-25313358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               
Show alignments to all cow chromosomes.