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Cow genome map

           
Conread name:
           
OvaP-UMC-pputal2-003-f07
        

               
Conread position:
               
1-392
               

               
Cow position:
               
chr21:34658668-34659061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 15
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr21:2514804-2515209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 68
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:4585718-4585323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 53
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr21:44331661-44331252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
46, 73
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr21:43240494-43240906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 6
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr21:47823642-47823230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 41
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr21:26835664-26835234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 64
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr21:29942626-29943061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 76
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr21:21216511-21216077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 68
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr21:42914114-42913678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 69
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:23984653-23984212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 46
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:24796404-24795964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 68
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr21:27743371-27743826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 68
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr21:28617232-28617669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 69
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr21:20925875-20925415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 68
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr21:20575830-20575379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
1-462
               

               
Cow position:
               
chr21:13897823-13898284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 70
               

               
Conread position:
               
1-465
               

               
Cow position:
               
chr21:34074597-34075071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 67
               

               
Conread position:
               
1-470
               

               
Cow position:
               
chr21:32535615-32536082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 41
               

               
Conread position:
               
1-493
               

               
Cow position:
               
chr21:4098519-4098997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 26
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr21:33729064-33729560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 64
               

               
Conread position:
               
1-496
               

               
Cow position:
               
chr21:15742473-15741954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
1-619
               

               
Cow position:
               
chr21:19766484-19767112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 68
               

               
Conread position:
               
1-624
               

               
Cow position:
               
chr21:15584773-15584171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 149
               

               
Conread position:
               
1-626
               

               
Cow position:
               
chr21:4282234-4281629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
1-627
               

               
Cow position:
               
chr21:23821801-23822407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 15
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr21:937682-938280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 68
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr21:24297130-24296506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 30
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr21:34391336-34390696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 68
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr21:363284-363656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chr21:38867935-38867546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 23
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chr21:48484809-48484411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 67
               

               
Conread position:
               
2-412
               

               
Cow position:
               
chr21:46973503-46973087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 68
               

               
Conread position:
               
2-419
               

               
Cow position:
               
chr21:1463864-1464284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 51
               

               
Conread position:
               
2-426
               

               
Cow position:
               
chr21:18494611-18495031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 52
               

               
Conread position:
               
2-459
               

               
Cow position:
               
chr21:45866570-45867028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 57
               

               
Conread position:
               
2-465
               

               
Cow position:
               
chr21:5455359-5454891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 71
               

               
Conread position:
               
2-466
               

               
Cow position:
               
chr21:43947-44406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
2-481
               

               
Cow position:
               
chr21:23192887-23192393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 67
               

               
Conread position:
               
2-481
               

               
Cow position:
               
chr21:24607027-24607502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
2-486
               

               
Cow position:
               
chr21:36163331-36162838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 63
               

               
Conread position:
               
2-494
               

               
Cow position:
               
chr21:4079985-4080477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 66
               

               
Conread position:
               
2-495
               

               
Cow position:
               
chr21:4905337-4904837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
2-495
               

               
Cow position:
               
chr21:5595295-5595776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 67
               

               
Conread position:
               
2-499
               

               
Cow position:
               
chr21:28442367-28442866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 52
               

               
Conread position:
               
2-501
               

               
Cow position:
               
chr21:33997594-33997091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 39
               

               
Conread position:
               
2-504
               

               
Cow position:
               
chr21:725257-724746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 49
               

               
Conread position:
               
2-510
               

               
Cow position:
               
chr21:7564691-7564162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 68
               

               
Conread position:
               
2-510
               

               
Cow position:
               
chr21:9940545-9940043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 65
               

               
Conread position:
               
2-510
               

               
Cow position:
               
chr21:45916073-45915573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 67
               

               
Conread position:
               
2-553
               

               
Cow position:
               
chr21:33209830-33210372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 67
               

               
Conread position:
               
2-568
               

               
Cow position:
               
chr21:16696001-16696576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 67
               

               
Conread position:
               
2-569
               

               
Cow position:
               
chr21:7582274-7581707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 67
               

               
Conread position:
               
2-612
               

               
Cow position:
               
chr21:22855853-22856460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 68
               

               
Conread position:
               
2-615
               

               
Cow position:
               
chr21:46912174-46912792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 71
               

               
Conread position:
               
2-623
               

               
Cow position:
               
chr21:48638112-48637504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 9
               

               
Conread position:
               
2-624
               

               
Cow position:
               
chr21:7672753-7673365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
2-624
               

               
Cow position:
               
chr21:38917866-38918454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 68
               

               
Conread position:
               
2-625
               

               
Cow position:
               
chr21:12366018-12366626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 67
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr21:5898779-5898150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 161
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr21:13089841-13089212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr21:22719143-22718524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 30
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr21:30849306-30848689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 23
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr21:42500667-42501311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 68
               

               
Conread position:
               
3-377
               

               
Cow position:
               
chr21:23683174-23683560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 175
               

               
Conread position:
               
3-391
               

               
Cow position:
               
chr21:26829603-26829232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
338, 67
               

               
Conread position:
               
3-392
               

               
Cow position:
               
chr21:34738231-34738637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 63
               

               
Conread position:
               
3-403
               

               
Cow position:
               
chr21:393654-394057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 39
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr21:17713945-17714359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
206, 65
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr21:41957551-41957132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 67
               

               
Conread position:
               
3-452
               

               
Cow position:
               
chr21:28881781-28882225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 66
               

               
Conread position:
               
3-456
               

               
Cow position:
               
chr21:3813835-3813392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 65
               

               
Conread position:
               
3-463
               

               
Cow position:
               
chr21:16612261-16612723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 66
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr21:4794853-4795327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 66
               

               
Conread position:
               
3-487
               

               
Cow position:
               
chr21:2366973-2367454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 65
               

               
Conread position:
               
3-496
               

               
Cow position:
               
chr21:28512173-28512645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 63
               

               
Conread position:
               
3-504
               

               
Cow position:
               
chr21:24698109-24698619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 68
               

               
Conread position:
               
3-510
               

               
Cow position:
               
chr21:42540588-42540077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 63
               

               
Conread position:
               
3-558
               

               
Cow position:
               
chr21:10514444-10515005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 66
               

               
Conread position:
               
3-559
               

               
Cow position:
               
chr21:15976273-15976820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 66
               

               
Conread position:
               
3-561
               

               
Cow position:
               
chr21:4399432-4399999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 66
               

               
Conread position:
               
3-568
               

               
Cow position:
               
chr21:26244570-26245113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
3-576
               

               
Cow position:
               
chr21:12616775-12617371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 22
               

               
Conread position:
               
3-594
               

               
Cow position:
               
chr21:39401226-39401821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
3-597
               

               
Cow position:
               
chr21:9415875-9416475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 66
               

               
Conread position:
               
3-619
               

               
Cow position:
               
chr21:28210818-28211424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 22
               

               
Conread position:
               
3-624
               

               
Cow position:
               
chr21:23606306-23606919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 65
               

               
Conread position:
               
3-627
               

               
Cow position:
               
chr21:44566066-44565474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 61
               

               
Conread position:
               
3-631
               

               
Cow position:
               
chr21:29214523-29213900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 66
               

               
Conread position:
               
3-631
               

               
Cow position:
               
chr21:32297870-32297249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 66
               

               
Conread position:
               
3-631
               

               
Cow position:
               
chr21:33983178-33982555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 66
               

               
Conread position:
               
4-466
               

               
Cow position:
               
chr21:4189473-4189942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
4-508
               

               
Cow position:
               
chr21:4998852-4998351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 65
               

               
Conread position:
               
4-625
               

               
Cow position:
               
chr21:45151998-45151372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 64
               

               
Conread position:
               
4-631
               

               
Cow position:
               
chr21:18289297-18289936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 51
               

               
Conread position:
               
5-499
               

               
Cow position:
               
chr21:24130720-24131203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 64
               

               
Conread position:
               
5-504
               

               
Cow position:
               
chr21:19363816-19363320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 41
               

               
Conread position:
               
5-510
               

               
Cow position:
               
chr21:25382632-25383171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 64
               

               
Conread position:
               
5-552
               

               
Cow position:
               
chr21:25764269-25764820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 47
               

               
Conread position:
               
5-558
               

               
Cow position:
               
chr21:33263485-33264035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 64
               

               
Conread position:
               
5-627
               

               
Cow position:
               
chr21:81704-82314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 63
               

               
Conread position:
               
5-631
               

               
Cow position:
               
chr21:20262700-20262088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 64
               

               
Conread position:
               
5-631
               

               
Cow position:
               
chr21:27230157-27229544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 17
               

               
Conread position:
               
5-631
               

               
Cow position:
               
chr21:30232065-30231437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 60
               

               
Conread position:
               
5-631
               

               
Cow position:
               
chr21:37299098-37299719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 64
               

               
Conread position:
               
5-631
               

               
Cow position:
               
chr21:44826231-44825616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 64
               

               
Conread position:
               
5-631
               

               
Cow position:
               
chr21:45971518-45970920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 16
               

               
Conread position:
               
6-471
               

               
Cow position:
               
chr21:2904828-2904372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
6-510
               

               
Cow position:
               
chr21:23801477-23800983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 49
               

               
Conread position:
               
7-469
               

               
Cow position:
               
chr21:17174783-17175250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 61
               

               
Conread position:
               
7-493
               

               
Cow position:
               
chr21:23785652-23786160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 215
               

               
Conread position:
               
7-504
               

               
Cow position:
               
chr21:44514902-44515403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 65
               

               
Conread position:
               
7-624
               

               
Cow position:
               
chr21:29069690-29069071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 34
               

               
Conread position:
               
8-446
               

               
Cow position:
               
chr21:17417118-17416678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
135, 44
               

               
Conread position:
               
8-456
               

               
Cow position:
               
chr21:6765064-6764609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 26
               

               
Conread position:
               
8-631
               

               
Cow position:
               
chr21:3236165-3236762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
8-631
               

               
Cow position:
               
chr21:24222904-24222258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 61
               

               
Conread position:
               
8-631
               

               
Cow position:
               
chr21:37479596-37480223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 61
               

               
Conread position:
               
9-510
               

               
Cow position:
               
chr21:30990628-30990142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 32
               

               
Conread position:
               
9-626
               

               
Cow position:
               
chr21:5238044-5238642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 59
               

               
Conread position:
               
9-631
               

               
Cow position:
               
chr21:23586501-23587131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 63
               

               
Conread position:
               
11-387
               

               
Cow position:
               
chr21:17434680-17434296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
131, 58
               

               
Conread position:
               
14-392
               

               
Cow position:
               
chr21:42190515-42190148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 55
               

               
Conread position:
               
16-461
               

               
Cow position:
               
chr21:5344313-5344762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 23
               

               
Conread position:
               
19-631
               

               
Cow position:
               
chr21:23672392-23673004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
23-442
               

               
Cow position:
               
chr21:5137855-5137410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
136, 48
               

               
Conread position:
               
27-631
               

               
Cow position:
               
chr21:641243-641843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 42
               

               
Conread position:
               
28-496
               

               
Cow position:
               
chr21:16188152-16187676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 41
               

               
Conread position:
               
34-624
               

               
Cow position:
               
chr21:13048533-13047938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 36
               

               
Conread position:
               
35-425
               

               
Cow position:
               
chr21:42905706-42905311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
174, 46
               

               
Conread position:
               
35-569
               

               
Cow position:
               
chr21:5392874-5392339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 34
               

               
Conread position:
               
36-628
               

               
Cow position:
               
chr21:31691146-31691728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 33
               

               
Conread position:
               
39-450
               

               
Cow position:
               
chr21:8985217-8985637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 30
               

               
Conread position:
               
39-568
               

               
Cow position:
               
chr21:42384174-42384708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
41-627
               

               
Cow position:
               
chr21:11645315-11644711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 28
               

               
Conread position:
               
41-627
               

               
Cow position:
               
chr21:20160354-20160933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 28
               

               
Conread position:
               
42-631
               

               
Cow position:
               
chr21:39664698-39664139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 5
               

               
Conread position:
               
43-540
               

               
Cow position:
               
chr21:38120775-38121272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 26
               

               
Conread position:
               
44-404
               

               
Cow position:
               
chr21:5596834-5597191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
166, 10
               

               
Conread position:
               
44-452
               

               
Cow position:
               
chr21:7132788-7132391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 26
               

               
Conread position:
               
44-623
               

               
Cow position:
               
chr21:19196495-19195910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 28
               

               
Conread position:
               
44-627
               

               
Cow position:
               
chr21:643010-643575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 24
               

               
Conread position:
               
44-630
               

               
Cow position:
               
chr21:24857984-24858574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 25
               

               
Conread position:
               
45-440
               

               
Cow position:
               
chr21:30192514-30192127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
92, 24
               

               
Conread position:
               
47-404
               

               
Cow position:
               
chr21:37322615-37322265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
123, 18
               

               
Conread position:
               
47-493
               

               
Cow position:
               
chr21:24887673-24888127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
47-493
               

               
Cow position:
               
chr21:28993951-28993493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
47-631
               

               
Cow position:
               
chr21:34010711-34010137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
49-624
               

               
Cow position:
               
chr21:41579418-41580007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
53-567
               

               
Cow position:
               
chr21:42414417-42413900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 17
               

               
Conread position:
               
53-631
               

               
Cow position:
               
chr21:41974697-41974108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 17
               

               
Conread position:
               
54-631
               

               
Cow position:
               
chr21:6833735-6834309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 14
               

               
Conread position:
               
55-366
               

               
Cow position:
               
chr21:17709512-17709829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
154, 25
               

               
Conread position:
               
55-630
               

               
Cow position:
               
chr21:34653770-34654328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 70
               

               
Conread position:
               
56-631
               

               
Cow position:
               
chr21:46263862-46264450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
57-623
               

               
Cow position:
               
chr21:19614863-19615426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
60-504
               

               
Cow position:
               
chr21:18850537-18850085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
61-561
               

               
Cow position:
               
chr21:395568-396057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 8
               

               
Conread position:
               
61-630
               

               
Cow position:
               
chr21:46849429-46848875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 8
               

               
Conread position:
               
62-495
               

               
Cow position:
               
chr21:40786361-40786807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 62
               

               
Conread position:
               
62-624
               

               
Cow position:
               
chr21:11740439-11739867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 7
               

               
Conread position:
               
62-631
               

               
Cow position:
               
chr21:47760467-47761030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 107
               

               
Conread position:
               
69-631
               

               
Cow position:
               
chr21:36762746-36763321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 104
               

               
Conread position:
               
70-504
               

               
Cow position:
               
chr21:23500123-23499690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 99
               

               
Conread position:
               
71-507
               

               
Cow position:
               
chr21:48176528-48176962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
72-444
               

               
Cow position:
               
chr21:12961213-12960819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
72-568
               

               
Cow position:
               
chr21:13128396-13127902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 46
               

               
Conread position:
               
72-631
               

               
Cow position:
               
chr21:11707050-11706506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 84
               

               
Conread position:
               
73-419
               

               
Cow position:
               
chr21:26870575-26870923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
89, 139
               

               
Conread position:
               
76-558
               

               
Cow position:
               
chr21:32237004-32237473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 92
               

               
Conread position:
               
77-489
               

               
Cow position:
               
chr21:44755072-44754654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 88
               

               
Conread position:
               
79-422
               

               
Cow position:
               
chr21:40058512-40058864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 91
               

               
Conread position:
               
81-412
               

               
Cow position:
               
chr21:2359601-2359938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 88
               

               
Conread position:
               
81-461
               

               
Cow position:
               
chr21:11639730-11640118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 36
               

               
Conread position:
               
81-477
               

               
Cow position:
               
chr21:2679268-2679669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 75
               

               
Conread position:
               
81-487
               

               
Cow position:
               
chr21:10726990-10727399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 89
               

               
Conread position:
               
81-631
               

               
Cow position:
               
chr21:28734203-28733653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 88
               

               
Conread position:
               
83-559
               

               
Cow position:
               
chr21:36297190-36297682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 86
               

               
Conread position:
               
84-456
               

               
Cow position:
               
chr21:28998195-28997807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 85
               

               
Conread position:
               
86-465
               

               
Cow position:
               
chr21:8888580-8888958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
146, 83
               

               
Conread position:
               
86-627
               

               
Cow position:
               
chr21:18568935-18568382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 71
               

               
Conread position:
               
90-532
               

               
Cow position:
               
chr21:30607385-30606918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 216
               

               
Conread position:
               
90-631
               

               
Cow position:
               
chr21:39889026-39888467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 79
               

               
Conread position:
               
91-392
               

               
Cow position:
               
chr21:10882145-10882466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
91-624
               

               
Cow position:
               
chr21:25127329-25127863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 64
               

               
Conread position:
               
92-442
               

               
Cow position:
               
chr21:36793602-36793972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
93-411
               

               
Cow position:
               
chr21:42023856-42024166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 76
               

               
Conread position:
               
94-631
               

               
Cow position:
               
chr21:17511501-17512033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 45
               

               
Conread position:
               
95-496
               

               
Cow position:
               
chr21:43357538-43357125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 116
               

               
Conread position:
               
95-631
               

               
Cow position:
               
chr21:36795323-36795883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 193
               

               
Conread position:
               
99-396
               

               
Cow position:
               
chr21:23478989-23478686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 17
               

               
Conread position:
               
102-631
               

               
Cow position:
               
chr21:44114400-44113877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 70
               

               
Conread position:
               
106-568
               

               
Cow position:
               
chr21:33350479-33350938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 50
               

               
Conread position:
               
111-624
               

               
Cow position:
               
chr21:13035310-13034783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
111-631
               

               
Cow position:
               
chr21:6713800-6713265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 59
               

               
Conread position:
               
112-386
               

               
Cow position:
               
chr21:20426279-20426548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
114-484
               

               
Cow position:
               
chr21:23150277-23149902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 55
               

               
Conread position:
               
123-410
               

               
Cow position:
               
chr21:17049343-17049635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
48, 85
               

               
Conread position:
               
125-371
               

               
Cow position:
               
chr21:8932124-8931883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
56, 112
               

               
Conread position:
               
127-380
               

               
Cow position:
               
chr21:8235267-8235015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 42
               

               
Conread position:
               
128-480
               

               
Cow position:
               
chr21:13410067-13409716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
128-490
               

               
Cow position:
               
chr21:5636965-5636595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
133-622
               

               
Cow position:
               
chr21:40899097-40899591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
134-368
               

               
Cow position:
               
chr21:28907890-28907656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
134-631
               

               
Cow position:
               
chr21:11114467-11114979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
136-631
               

               
Cow position:
               
chr21:27569400-27568900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
137-510
               

               
Cow position:
               
chr21:41878241-41878614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
137-631
               

               
Cow position:
               
chr21:15445314-15444823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
140-631
               

               
Cow position:
               
chr21:33490-33992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
141-504
               

               
Cow position:
               
chr21:27124359-27123982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
141-504
               

               
Cow position:
               
chr21:42348909-42348556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
142-410
               

               
Cow position:
               
chr21:9278138-9278423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 265
               

               
Conread position:
               
143-623
               

               
Cow position:
               
chr21:8351530-8351043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
144-567
               

               
Cow position:
               
chr21:40168836-40168428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
164, 26
               

               
Conread position:
               
148-567
               

               
Cow position:
               
chr21:28626017-28626433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
150-411
               

               
Cow position:
               
chr21:48251252-48250982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
150-631
               

               
Cow position:
               
chr21:24797473-24797914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
110, 19
               

               
Conread position:
               
156-510
               

               
Cow position:
               
chr21:31662244-31662612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
159-631
               

               
Cow position:
               
chr21:23535500-23535972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
162-467
               

               
Cow position:
               
chr21:17674447-17674131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
162-509
               

               
Cow position:
               
chr21:3818005-3818353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
164-624
               

               
Cow position:
               
chr21:41620910-41621380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 356
               

               
Conread position:
               
169-374
               

               
Cow position:
               
chr21:46829472-46829261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
169-383
               

               
Cow position:
               
chr21:24714449-24714675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
169-392
               

               
Cow position:
               
chr21:2927407-2927175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
74, 47
               

               
Conread position:
               
169-419
               

               
Cow position:
               
chr21:37361678-37361425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
15, 128
               

               
Conread position:
               
169-429
               

               
Cow position:
               
chr21:34053391-34053129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
169-495
               

               
Cow position:
               
chr21:8618070-8618394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
41, 232
               

               
Conread position:
               
169-495
               

               
Cow position:
               
chr21:24094948-24094630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
41, 86
               

               
Conread position:
               
169-495
               

               
Cow position:
               
chr21:40133951-40134287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
46, 237
               

               
Conread position:
               
169-504
               

               
Cow position:
               
chr21:3498294-3498632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
41, 172
               

               
Conread position:
               
169-532
               

               
Cow position:
               
chr21:47215385-47215032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
41, 124
               

               
Conread position:
               
169-557
               

               
Cow position:
               
chr21:1058873-1059262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
98, 263
               

               
Conread position:
               
169-566
               

               
Cow position:
               
chr21:29484780-29485175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 305
               

               
Conread position:
               
169-597
               

               
Cow position:
               
chr21:19258622-19259041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 182
               

               
Conread position:
               
169-624
               

               
Cow position:
               
chr21:22860798-22861244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 327
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr21:6051302-6051764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 213
               

               
Conread position:
               
170-509
               

               
Cow position:
               
chr21:28955319-28955645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 90
               

               
Conread position:
               
170-509
               

               
Cow position:
               
chr21:34739646-34739988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
99, 36
               

               
Conread position:
               
170-509
               

               
Cow position:
               
chr21:35996968-35997315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
12, 186
               

               
Conread position:
               
170-510
               

               
Cow position:
               
chr21:18828512-18828157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 167
               

               
Conread position:
               
170-510
               

               
Cow position:
               
chr21:45330811-45330462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 258
               

               
Conread position:
               
170-510
               

               
Cow position:
               
chr21:45355633-45355978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
41, 214
               

               
Conread position:
               
170-564
               

               
Cow position:
               
chr21:12801947-12801548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
170-591
               

               
Cow position:
               
chr21:8549478-8549902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
170-626
               

               
Cow position:
               
chr21:29002365-29001892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 352
               

               
Conread position:
               
170-627
               

               
Cow position:
               
chr21:8206587-8207012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
170-631
               

               
Cow position:
               
chr21:14464374-14464845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
91, 121
               

               
Conread position:
               
171-495
               

               
Cow position:
               
chr21:41597613-41597941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
39, 236
               

               
Conread position:
               
172-452
               

               
Cow position:
               
chr21:28443580-28443285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
32, 212
               

               
Conread position:
               
172-466
               

               
Cow position:
               
chr21:3381282-3380977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
95, 119
               

               
Conread position:
               
172-630
               

               
Cow position:
               
chr21:9310842-9311313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
33, 252
               

               
Conread position:
               
172-631
               

               
Cow position:
               
chr21:27521526-27521083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
173-392
               

               
Cow position:
               
chr21:42145716-42145940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
36, 177
               

               
Conread position:
               
173-398
               

               
Cow position:
               
chr21:25800212-25800430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
160, 9
               

               
Conread position:
               
173-558
               

               
Cow position:
               
chr21:42053465-42053091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 124
               

               
Conread position:
               
174-396
               

               
Cow position:
               
chr21:31764335-31764099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
175-508
               

               
Cow position:
               
chr21:33727659-33727316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 136
               

               
Conread position:
               
175-621
               

               
Cow position:
               
chr21:3361212-3360767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 130
               

               
Conread position:
               
176-492
               

               
Cow position:
               
chr21:47730216-47729894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
34, 92
               

               
Conread position:
               
176-631
               

               
Cow position:
               
chr21:32339932-32339486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
177-504
               

               
Cow position:
               
chr21:9353244-9353586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 180
               

               
Conread position:
               
177-630
               

               
Cow position:
               
chr21:38449648-38449194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
178-444
               

               
Cow position:
               
chr21:21077134-21077405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 209
               

               
Conread position:
               
178-464
               

               
Cow position:
               
chr21:30150464-30150164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
178-510
               

               
Cow position:
               
chr21:46242434-46242096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 278
               

               
Conread position:
               
178-596
               

               
Cow position:
               
chr21:35569579-35569136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 30
               

               
Conread position:
               
178-631
               

               
Cow position:
               
chr21:13585253-13584793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 33
               

               
Conread position:
               
178-631
               

               
Cow position:
               
chr21:23568013-23568484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 222
               

               
Conread position:
               
178-631
               

               
Cow position:
               
chr21:42135819-42135360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 349
               

               
Conread position:
               
179-541
               

               
Cow position:
               
chr21:1591357-1591730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
179-630
               

               
Cow position:
               
chr21:31253341-31253793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
29, 232
               

               
Conread position:
               
179-630
               

               
Cow position:
               
chr21:42841785-42841327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
180-566
               

               
Cow position:
               
chr21:10118360-10118763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 200
               

               
Conread position:
               
182-461
               

               
Cow position:
               
chr21:6102460-6102165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
25, 129
               

               
Conread position:
               
182-627
               

               
Cow position:
               
chr21:47465312-47464864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 113
               

               
Conread position:
               
184-631
               

               
Cow position:
               
chr21:40589672-40589221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 144
               

               
Conread position:
               
185-383
               

               
Cow position:
               
chr21:40065503-40065296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
185-403
               

               
Cow position:
               
chr21:28944552-28944326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
24, 143
               

               
Conread position:
               
185-495
               

               
Cow position:
               
chr21:10601556-10601245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 157
               

               
Conread position:
               
185-496
               

               
Cow position:
               
chr21:17428315-17428627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 42
               

               
Conread position:
               
185-496
               

               
Cow position:
               
chr21:18942017-18941703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
185-496
               

               
Cow position:
               
chr21:22353418-22353106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 42
               

               
Conread position:
               
185-509
               

               
Cow position:
               
chr21:34565401-34565071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 164
               

               
Conread position:
               
185-544
               

               
Cow position:
               
chr21:33791556-33791202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
25, 221
               

               
Conread position:
               
185-561
               

               
Cow position:
               
chr21:45850898-45850517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
77, 292
               

               
Conread position:
               
185-568
               

               
Cow position:
               
chr21:47764300-47763921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
185-576
               

               
Cow position:
               
chr21:13365153-13365551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
185-623
               

               
Cow position:
               
chr21:14452042-14452484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 67
               

               
Conread position:
               
185-624
               

               
Cow position:
               
chr21:17193948-17193496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 261
               

               
Conread position:
               
185-625
               

               
Cow position:
               
chr21:5426758-5427180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
186-510
               

               
Cow position:
               
chr21:18845202-18844867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
186-522
               

               
Cow position:
               
chr21:15610967-15611297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
187-631
               

               
Cow position:
               
chr21:32559540-32559112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 117
               

               
Conread position:
               
188-499
               

               
Cow position:
               
chr21:46860283-46859988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
188-592
               

               
Cow position:
               
chr21:9990329-9990731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 161
               

               
Conread position:
               
190-496
               

               
Cow position:
               
chr21:46143760-46144090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
190-510
               

               
Cow position:
               
chr21:37345285-37344956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
18, 220
               

               
Conread position:
               
191-631
               

               
Cow position:
               
chr21:13488337-13488814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 106
               

               
Conread position:
               
192-631
               

               
Cow position:
               
chr21:802475-802064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 153
               

               
Conread position:
               
193-392
               

               
Cow position:
               
chr21:45375436-45375649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
74, 137
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chr21:10608634-10608404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 204
               

               
Conread position:
               
193-631
               

               
Cow position:
               
chr21:17183741-17184177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
196-626
               

               
Cow position:
               
chr21:13840140-13840582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 227
               

               
Conread position:
               
197-446
               

               
Cow position:
               
chr21:49662293-49662040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
197-568
               

               
Cow position:
               
chr21:18790732-18790363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 201
               

               
Conread position:
               
198-510
               

               
Cow position:
               
chr21:8235719-8235417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
90, 69
               

               
Conread position:
               
198-625
               

               
Cow position:
               
chr21:22194286-22193841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
12, 332
               

               
Conread position:
               
200-617
               

               
Cow position:
               
chr21:41198583-41198152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
61, 255
               

               
Conread position:
               
201-587
               

               
Cow position:
               
chr21:21169667-21169278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
9, 264
               

               
Conread position:
               
207-623
               

               
Cow position:
               
chr21:10114494-10114082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
60, 88
               

               
Conread position:
               
208-570
               

               
Cow position:
               
chr21:10000916-10001274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
208-631
               

               
Cow position:
               
chr21:28244312-28244726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
211-569
               

               
Cow position:
               
chr21:27624551-27624897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
213-568
               

               
Cow position:
               
chr21:10633800-10633442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
54, 261
               

               
Conread position:
               
213-631
               

               
Cow position:
               
chr21:41590716-41590307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 79
               

               
Conread position:
               
215-572
               

               
Cow position:
               
chr21:11456967-11456600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 219
               

               
Conread position:
               
220-568
               

               
Cow position:
               
chr21:24642366-24642723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
16, 259
               

               
Conread position:
               
226-460
               

               
Cow position:
               
chr21:18041989-18041752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 176
               

               
Conread position:
               
228-499
               

               
Cow position:
               
chr21:35354393-35354665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 164
               

               
Conread position:
               
231-597
               

               
Cow position:
               
chr21:42007601-42007234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
235-631
               

               
Cow position:
               
chr21:20152810-20153216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 175
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:18414920-18415189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
236-621
               

               
Cow position:
               
chr21:7825312-7824941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 154
               

               
Conread position:
               
248-631
               

               
Cow position:
               
chr21:12462089-12461710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr21:1511173-1511540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
255-621
               

               
Cow position:
               
chr21:10561697-10561336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 260
               

               
Conread position:
               
259-475
               

               
Cow position:
               
chr21:44733266-44733063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
259-630
               

               
Cow position:
               
chr21:957564-957927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 198
               

               
Conread position:
               
259-631
               

               
Cow position:
               
chr21:17875300-17874931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 149
               

               
Conread position:
               
260-380
               

               
Cow position:
               
chr21:2526003-2526127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
260-386
               

               
Cow position:
               
chr21:37886307-37886431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
260-423
               

               
Cow position:
               
chr21:21143794-21143959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 43
               

               
Conread position:
               
260-428
               

               
Cow position:
               
chr21:16481550-16481380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 155
               

               
Conread position:
               
260-440
               

               
Cow position:
               
chr21:9980071-9979895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
260-446
               

               
Cow position:
               
chr21:31511182-31511355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
260-449
               

               
Cow position:
               
chr21:14515742-14515925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 138
               

               
Conread position:
               
260-455
               

               
Cow position:
               
chr21:39450272-39450071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
260-461
               

               
Cow position:
               
chr21:5985425-5985222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 116
               

               
Conread position:
               
260-491
               

               
Cow position:
               
chr21:17856440-17856670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 57
               

               
Conread position:
               
260-493
               

               
Cow position:
               
chr21:32454797-32455032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 86
               

               
Conread position:
               
260-495
               

               
Cow position:
               
chr21:44962690-44962927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 76
               

               
Conread position:
               
260-508
               

               
Cow position:
               
chr21:19412122-19411870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 156
               

               
Conread position:
               
260-508
               

               
Cow position:
               
chr21:25629015-25628766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
59, 39
               

               
Conread position:
               
260-509
               

               
Cow position:
               
chr21:11250762-11251013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
58, 146
               

               
Conread position:
               
260-510
               

               
Cow position:
               
chr21:20192795-20193039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
260-510
               

               
Cow position:
               
chr21:45921166-45920913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 137
               

               
Conread position:
               
260-514
               

               
Cow position:
               
chr21:36789690-36789944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
127, 58
               

               
Conread position:
               
260-550
               

               
Cow position:
               
chr21:12723053-12723332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 83
               

               
Conread position:
               
260-559
               

               
Cow position:
               
chr21:2657712-2658003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
260-598
               

               
Cow position:
               
chr21:42096961-42097308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
55, 139
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr21:10004989-10004631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr21:17637795-17638147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
57, 80
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr21:18155677-18155312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
59, 132
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr21:18318623-18318965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
142, 55
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr21:18818384-18818013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr21:41455054-41454685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
260-627
               

               
Cow position:
               
chr21:20260428-20260042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 329
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr21:9301105-9301484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 160
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr21:10673024-10673369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
81, 50
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr21:20032943-20032573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 126
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr21:23980289-23979920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
60, 155
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr21:27810301-27810651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 134
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr21:30222238-30222601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr21:48234266-48233917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
261-442
               

               
Cow position:
               
chr21:39809793-39809971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
261-495
               

               
Cow position:
               
chr21:9698193-9697950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
261-509
               

               
Cow position:
               
chr21:20418791-20418538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
261-628
               

               
Cow position:
               
chr21:37790110-37789746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
262-624
               

               
Cow position:
               
chr21:46937-47299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
79, 25
               

               
Conread position:
               
263-410
               

               
Cow position:
               
chr21:8187614-8187460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
263-495
               

               
Cow position:
               
chr21:6909984-6909748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 134
               

               
Conread position:
               
264-509
               

               
Cow position:
               
chr21:32904258-32904011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
264-620
               

               
Cow position:
               
chr21:10410117-10410471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
264-624
               

               
Cow position:
               
chr21:21686315-21686669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
51, 94
               

               
Conread position:
               
265-453
               

               
Cow position:
               
chr21:29224964-29224772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
53, 109
               

               
Conread position:
               
265-504
               

               
Cow position:
               
chr21:22465095-22465330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
76, 106
               

               
Conread position:
               
266-409
               

               
Cow position:
               
chr21:41514703-41514848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
267-568
               

               
Cow position:
               
chr21:30250290-30250005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 75
               

               
Conread position:
               
267-631
               

               
Cow position:
               
chr21:29978856-29978506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
269-435
               

               
Cow position:
               
chr21:4568187-4568355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
269-623
               

               
Cow position:
               
chr21:34151482-34151827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 202
               

               
Conread position:
               
270-493
               

               
Cow position:
               
chr21:6017519-6017753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
270-493
               

               
Cow position:
               
chr21:38664541-38664769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
270-495
               

               
Cow position:
               
chr21:17008884-17009111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
270-623
               

               
Cow position:
               
chr21:33580315-33580662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
271-627
               

               
Cow position:
               
chr21:22121426-22121757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
272-631
               

               
Cow position:
               
chr21:44658487-44658820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
74, 98
               

               
Conread position:
               
273-623
               

               
Cow position:
               
chr21:17560023-17559665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
67, 142
               

               
Conread position:
               
274-631
               

               
Cow position:
               
chr21:45906714-45906362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 144
               

               
Conread position:
               
275-627
               

               
Cow position:
               
chr21:30835270-30835621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 144
               

               
Conread position:
               
275-631
               

               
Cow position:
               
chr21:6997846-6998200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
46, 132
               

               
Conread position:
               
278-623
               

               
Cow position:
               
chr21:28237803-28237448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 178
               

               
Conread position:
               
278-631
               

               
Cow position:
               
chr21:22210333-22209984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
63, 120
               

               
Conread position:
               
279-624
               

               
Cow position:
               
chr21:19067441-19067785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
40, 70
               

               
Conread position:
               
281-612
               

               
Cow position:
               
chr21:9036209-9036541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 233
               

               
Conread position:
               
282-479
               

               
Cow position:
               
chr21:13495455-13495657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
285-522
               

               
Cow position:
               
chr21:41107844-41107612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 77
               

               
Conread position:
               
286-478
               

               
Cow position:
               
chr21:37014484-37014293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
286-623
               

               
Cow position:
               
chr21:10858735-10859061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 106
               

               
Conread position:
               
286-624
               

               
Cow position:
               
chr21:16152350-16152692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 238
               

               
Conread position:
               
291-559
               

               
Cow position:
               
chr21:4280748-4280481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
292-491
               

               
Cow position:
               
chr21:33360109-33359917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 100
               

               
Conread position:
               
292-495
               

               
Cow position:
               
chr21:11198224-11198018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 121
               

               
Conread position:
               
292-510
               

               
Cow position:
               
chr21:46552181-46551958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 100
               

               
Conread position:
               
292-599
               

               
Cow position:
               
chr21:36909859-36910157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 116
               

               
Conread position:
               
293-495
               

               
Cow position:
               
chr21:46140967-46141178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 119
               

               
Conread position:
               
293-551
               

               
Cow position:
               
chr21:45262886-45262628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 74
               

               
Conread position:
               
293-627
               

               
Cow position:
               
chr21:47714081-47713752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 8
               

               
Conread position:
               
293-631
               

               
Cow position:
               
chr21:47719373-47719046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 49
               

               
Conread position:
               
294-555
               

               
Cow position:
               
chr21:33414158-33413902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
294-631
               

               
Cow position:
               
chr21:16569828-16570148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
47, 103
               

               
Conread position:
               
295-631
               

               
Cow position:
               
chr21:8349256-8349581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
295-631
               

               
Cow position:
               
chr21:15544290-15543980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
295-631
               

               
Cow position:
               
chr21:40266049-40266383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
22, 124
               

               
Conread position:
               
297-631
               

               
Cow position:
               
chr21:30256340-30255998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
297-631
               

               
Cow position:
               
chr21:40432379-40432723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
23, 79
               

               
Conread position:
               
298-631
               

               
Cow position:
               
chr21:44214055-44214370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 173
               

               
Conread position:
               
299-449
               

               
Cow position:
               
chr21:27079907-27079752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
299-631
               

               
Cow position:
               
chr21:37640487-37640825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
300-583
               

               
Cow position:
               
chr21:7394314-7394591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 109
               

               
Conread position:
               
302-631
               

               
Cow position:
               
chr21:41140783-41140456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
19, 160
               

               
Conread position:
               
303-461
               

               
Cow position:
               
chr21:12339575-12339737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
304-502
               

               
Cow position:
               
chr21:23397908-23397710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
84, 40
               

               
Conread position:
               
304-536
               

               
Cow position:
               
chr21:297689-297924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
5, 219
               

               
Conread position:
               
305-514
               

               
Cow position:
               
chr21:40192358-40192155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
305-623
               

               
Cow position:
               
chr21:10292428-10292745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 88
               

               
Conread position:
               
305-631
               

               
Cow position:
               
chr21:8426379-8426702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
305-631
               

               
Cow position:
               
chr21:11779592-11779279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
307-624
               

               
Cow position:
               
chr21:9707333-9707015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 82
               

               
Conread position:
               
308-631
               

               
Cow position:
               
chr21:18060016-18059700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 93
               

               
Conread position:
               
308-631
               

               
Cow position:
               
chr21:28919582-28919272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
309-537
               

               
Cow position:
               
chr21:35899786-35900010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
32, 151
               

               
Conread position:
               
309-631
               

               
Cow position:
               
chr21:13656687-13656375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
310-631
               

               
Cow position:
               
chr21:868982-868660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
313-446
               

               
Cow position:
               
chr21:41598064-41598201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
313-631
               

               
Cow position:
               
chr21:5464693-5465006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
27, 129
               

               
Conread position:
               
313-631
               

               
Cow position:
               
chr21:17890249-17890562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
28, 88
               

               
Conread position:
               
313-631
               

               
Cow position:
               
chr21:22014133-22014450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
315-631
               

               
Cow position:
               
chr21:36910688-36910996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 75
               

               
Conread position:
               
317-631
               

               
Cow position:
               
chr21:41522457-41522154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
318-631
               

               
Cow position:
               
chr21:19060136-19059832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
323-624
               

               
Cow position:
               
chr21:10657146-10656849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
324-630
               

               
Cow position:
               
chr21:45835445-45835132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
325-631
               

               
Cow position:
               
chr21:742246-742533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
327-627
               

               
Cow position:
               
chr21:13842448-13842748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 190
               

               
Conread position:
               
327-631
               

               
Cow position:
               
chr21:48527370-48527675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 69
               

               
Conread position:
               
330-596
               

               
Cow position:
               
chr21:29014597-29014334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
335-631
               

               
Cow position:
               
chr21:14126258-14126531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
339-495
               

               
Cow position:
               
chr21:42209657-42209499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
339-568
               

               
Cow position:
               
chr21:10538276-10538054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
213, 19
               

               
Conread position:
               
339-611
               

               
Cow position:
               
chr21:7377953-7377684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
60, 167
               

               
Conread position:
               
339-624
               

               
Cow position:
               
chr21:20165615-20165891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 48
               

               
Conread position:
               
339-624
               

               
Cow position:
               
chr21:36696116-36695838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
55, 76
               

               
Conread position:
               
339-628
               

               
Cow position:
               
chr21:10883950-10883662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
77, 88
               

               
Conread position:
               
339-631
               

               
Cow position:
               
chr21:38720226-38720508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
340-631
               

               
Cow position:
               
chr21:12354718-12354443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
57, 28
               

               
Conread position:
               
340-631
               

               
Cow position:
               
chr21:28030263-28030538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
47, 76
               

               
Conread position:
               
342-547
               

               
Cow position:
               
chr21:37235362-37235563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
342-631
               

               
Cow position:
               
chr21:71561-71845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 171
               

               
Conread position:
               
343-569
               

               
Cow position:
               
chr21:11057897-11057683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
347-511
               

               
Cow position:
               
chr21:47160199-47160364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
348-615
               

               
Cow position:
               
chr21:829227-828967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
356-597
               

               
Cow position:
               
chr21:7768425-7768660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 175
               

               
Conread position:
               
356-631
               

               
Cow position:
               
chr21:674675-674927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
356-631
               

               
Cow position:
               
chr21:21615765-21616035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 168
               

               
Conread position:
               
356-631
               

               
Cow position:
               
chr21:30980587-30980300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
49, 115
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr21:41046796-41046991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
45, 104
               

               
Conread position:
               
357-627
               

               
Cow position:
               
chr21:7169677-7169942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
6, 157
               

               
Conread position:
               
358-510
               

               
Cow position:
               
chr21:20183064-20183216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
52, 36
               

               
Conread position:
               
359-631
               

               
Cow position:
               
chr21:46132569-46132851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
153, 45
               

               
Conread position:
               
362-623
               

               
Cow position:
               
chr21:19240880-19240627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
31, 153
               

               
Conread position:
               
363-631
               

               
Cow position:
               
chr21:7394287-7394012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 34
               

               
Conread position:
               
363-631
               

               
Cow position:
               
chr21:12739077-12739347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
363-631
               

               
Cow position:
               
chr21:46599357-46599617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
35, 150
               

               
Conread position:
               
368-623
               

               
Cow position:
               
chr21:41287792-41287545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 142
               

               
Conread position:
               
368-627
               

               
Cow position:
               
chr21:12104367-12104608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 37
               

               
Conread position:
               
373-624
               

               
Cow position:
               
chr21:17519036-17519280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
375-568
               

               
Cow position:
               
chr21:19360167-19359977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
376-631
               

               
Cow position:
               
chr21:36682332-36682585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 137
               

               
Conread position:
               
386-626
               

               
Cow position:
               
chr21:39319388-39319156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
166, 8
               

               
Conread position:
               
390-631
               

               
Cow position:
               
chr21:6851195-6851424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
25, 128
               

               
Conread position:
               
390-631
               

               
Cow position:
               
chr21:17252952-17252718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
390-631
               

               
Cow position:
               
chr21:19868925-19868703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
393-626
               

               
Cow position:
               
chr21:24266540-24266307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
394-619
               

               
Cow position:
               
chr21:20163735-20163954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
394-631
               

               
Cow position:
               
chr21:22850949-22851174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
395-631
               

               
Cow position:
               
chr21:48334760-48334526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
183, 32
               

               
Conread position:
               
397-629
               

               
Cow position:
               
chr21:39393782-39394006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
217, 18
               

               
Conread position:
               
397-631
               

               
Cow position:
               
chr21:24875385-24875611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
399-623
               

               
Cow position:
               
chr21:9278555-9278779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 113
               

               
Conread position:
               
399-624
               

               
Cow position:
               
chr21:20213744-20213519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
401-555
               

               
Cow position:
               
chr21:46451918-46451770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
401-631
               

               
Cow position:
               
chr21:28907506-28907290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
402-630
               

               
Cow position:
               
chr21:16498554-16498773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
414-631
               

               
Cow position:
               
chr21:26018428-26018640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
417-631
               

               
Cow position:
               
chr21:2537087-2536877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
135, 90
               

               
Conread position:
               
417-631
               

               
Cow position:
               
chr21:40820801-40820592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
418-631
               

               
Cow position:
               
chr21:11182606-11182808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
418-631
               

               
Cow position:
               
chr21:25012135-25012337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
419-631
               

               
Cow position:
               
chr21:15012493-15012690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
425-631
               

               
Cow position:
               
chr21:8506486-8506288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
425-631
               

               
Cow position:
               
chr21:8509374-8509176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
427-631
               

               
Cow position:
               
chr21:20174380-20174571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
434-631
               

               
Cow position:
               
chr21:13883550-13883736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
437-631
               

               
Cow position:
               
chr21:8986094-8986285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
113, 23
               

               
Conread position:
               
445-631
               

               
Cow position:
               
chr21:27744105-27744288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
103, 67
               

               
Conread position:
               
464-630
               

               
Cow position:
               
chr21:18056030-18055871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
469-626
               

               
Cow position:
               
chr21:32272024-32272184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
469-630
               

               
Cow position:
               
chr21:44732940-44732785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
476-631
               

               
Cow position:
               
chr21:16120050-16119903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
489-631
               

               
Cow position:
               
chr21:37479469-37479331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
75, 24
               
Show alignments to all cow chromosomes.