Cow genome map

Conread name: Ovi1-UMC-pd3ov1-003-d11

Conread position: 75-346
Cow position: chr24:22193302-22193588 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 35, 0

Conread position: 108-346
Cow position: chr24:37650292-37650527 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 138, 88

Conread position: 111-346
Cow position: chr24:25320607-25320850 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 21, 86

Conread position: 129-346
Cow position: chr24:19466299-19466073 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 129-346
Cow position: chr24:27906062-27906295 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 183
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 107, 0

Conread position: 129-346
Cow position: chr24:33372196-33372411 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 155, 55

Conread position: 131-338
Cow position: chr24:814626-814416 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 170
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 115, 65

Conread position: 131-340
Cow position: chr24:29606431-29606216 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 46, 36

Conread position: 131-345
Cow position: chr24:11876520-11876741 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 169
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 115, 36

Conread position: 131-345
Cow position: chr24:27543840-27543620 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 131-345
Cow position: chr24:33944029-33944260 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 66, 0

Conread position: 131-346
Cow position: chr24:2402741-2402517 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 70, 126

Conread position: 131-346
Cow position: chr24:3165461-3165678 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 115, 46

Conread position: 131-346
Cow position: chr24:5141569-5141801 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 178
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 17, 0

Conread position: 131-346
Cow position: chr24:6141320-6141103 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 121, 111

Conread position: 131-346
Cow position: chr24:7001433-7001207 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 109, 0

Conread position: 131-346
Cow position: chr24:11006850-11007076 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 85, 0

Conread position: 131-346
Cow position: chr24:11839816-11840035 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 70

Conread position: 131-346
Cow position: chr24:11874988-11874776 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 115, 63

Conread position: 131-346
Cow position: chr24:11886798-11887018 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 115, 96

Conread position: 131-346
Cow position: chr24:14279523-14279749 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 173
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 121, 111

Conread position: 131-346
Cow position: chr24:15288493-15288718 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 115, 0

Conread position: 131-346
Cow position: chr24:15666774-15666549 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 131-346
Cow position: chr24:18266530-18266311 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 115, 28

Conread position: 131-346
Cow position: chr24:18741933-18741714 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 171
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 115, 43

Conread position: 131-346
Cow position: chr24:19658183-19658410 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 131-346
Cow position: chr24:20283246-20283021 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 122, 65

Conread position: 131-346
Cow position: chr24:24002614-24002836 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 125

Conread position: 131-346
Cow position: chr24:24250360-24250585 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 81, 0

Conread position: 131-346
Cow position: chr24:27270432-27270636 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 115, 38

Conread position: 131-346
Cow position: chr24:27720113-27719898 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 115, 60

Conread position: 131-346
Cow position: chr24:28496952-28496726 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 118, 110

Conread position: 131-346
Cow position: chr24:28553910-28553690 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 73, 0

Conread position: 131-346
Cow position: chr24:28690330-28690548 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 60, 173

Conread position: 131-346
Cow position: chr24:30235514-30235730 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 115, 0

Conread position: 131-346
Cow position: chr24:32014761-32014983 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 115, 11

Conread position: 131-346
Cow position: chr24:33153424-33153634 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 115, 27

Conread position: 131-346
Cow position: chr24:34564760-34564980 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 38, 115

Conread position: 131-346
Cow position: chr24:36486428-36486201 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 22, 17

Conread position: 131-346
Cow position: chr24:36722367-36722582 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 115, 143

Conread position: 131-346
Cow position: chr24:37975433-37975214 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 128, 32

Conread position: 131-346
Cow position: chr24:38814610-38814825 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 115, 65

Conread position: 131-346
Cow position: chr24:39219210-39218986 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 128, 0

Conread position: 131-346
Cow position: chr24:39483112-39483334 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 115, 93

Conread position: 131-346
Cow position: chr24:42103006-42103226 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 72, 100

Conread position: 131-346
Cow position: chr24:43363996-43364216 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 65, 24

Conread position: 131-346
Cow position: chr24:44041370-44041156 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 104, 56

Conread position: 132-338
Cow position: chr24:27149044-27149246 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 153, 71

Conread position: 132-345
Cow position: chr24:20862324-20862102 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 71, 114

Conread position: 132-346
Cow position: chr24:9087835-9087623 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 89, 0

Conread position: 132-346
Cow position: chr24:15036710-15036910 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 79, 26

Conread position: 132-346
Cow position: chr24:15472995-15473217 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 117, 73

Conread position: 132-346
Cow position: chr24:21264869-21264654 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 152, 119

Conread position: 132-346
Cow position: chr24:23556691-23556470 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 120, 56

Conread position: 132-346
Cow position: chr24:32158630-32158415 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 152, 84

Conread position: 132-346
Cow position: chr24:32456065-32456287 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 114, 50

Conread position: 132-346
Cow position: chr24:32668915-32669138 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 78, 32

Conread position: 132-346
Cow position: chr24:37205239-37205022 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 117, 92

Conread position: 133-346
Cow position: chr24:20874318-20874537 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 113, 44

Conread position: 133-346
Cow position: chr24:33098849-33098635 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 113, 81

Conread position: 133-346
Cow position: chr24:35572125-35572345 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 113, 92

Conread position: 134-342
Cow position: chr24:29596169-29595958 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 148, 30

Conread position: 134-344
Cow position: chr24:3493533-3493747 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 112, 30

Conread position: 134-346
Cow position: chr24:6071237-6071455 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 166
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 127, 62

Conread position: 134-346
Cow position: chr24:6161206-6160990 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 112, 70

Conread position: 134-346
Cow position: chr24:6341808-6342031 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 108, 126

Conread position: 134-346
Cow position: chr24:7917730-7917508 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 70, 117

Conread position: 134-346
Cow position: chr24:18025326-18025111 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 112, 70

Conread position: 134-346
Cow position: chr24:20024246-20024468 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 112, 0

Conread position: 134-346
Cow position: chr24:39440918-39440700 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 109, 55

Conread position: 135-344
Cow position: chr24:39159904-39159691 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 130, 114

Conread position: 135-344
Cow position: chr24:43693114-43692888 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 135-346
Cow position: chr24:29679671-29679450 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 105, 23

Conread position: 136-346
Cow position: chr24:29027693-29027901 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 169, 60

Conread position: 137-346
Cow position: chr24:28062588-28062809 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 78, 45

Conread position: 138-344
Cow position: chr24:34532766-34532982 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 108, 0

Conread position: 140-346
Cow position: chr24:38374933-38375142 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 116, 56

Conread position: 141-345
Cow position: chr24:27267284-27267487 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 102, 55

Conread position: 144-346
Cow position: chr24:26385009-26384796 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 6, 0

Conread position: 145-346
Cow position: chr24:16625851-16625644 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 146-346
Cow position: chr24:28233041-28233249 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 52, 70

Conread position: 146-346
Cow position: chr24:44987723-44987526 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 94, 140

Conread position: 152-346
Cow position: chr24:5754498-5754695 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 152-346
Cow position: chr24:38347336-38347539 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 159
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 84, 0

Conread position: 159-346
Cow position: chr24:3663849-3664025 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 89, 0

Conread position: 160-346
Cow position: chr24:29494212-29494030 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 89, 0

Conread position: 162-346
Cow position: chr24:12466697-12466511 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 89, 0

Conread position: 165-346
Cow position: chr24:34315029-34315209 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 98, 41

Conread position: 167-346
Cow position: chr24:18734688-18734495 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 69, 108

Conread position: 168-344
Cow position: chr24:40908689-40908874 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 78, 0

Conread position: 175-346
Cow position: chr24:27341344-27341163 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 71, 0

Conread position: 176-346
Cow position: chr24:29781843-29782021 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 70, 65

Conread position: 182-346
Cow position: chr24:15861910-15861744 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 64, 21

Conread position: 182-346
Cow position: chr24:30177923-30178092 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 67, 120

Conread position: 190-344
Cow position: chr24:19804381-19804546 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 190-346
Cow position: chr24:28600918-28600759 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 28, 113

Conread position: 194-344
Cow position: chr24:19535545-19535397 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 110, 54

Conread position: 204-346
Cow position: chr24:2730861-2730713 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 204-346
Cow position: chr24:18974910-18975057 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 36, 54

Conread position: 207-346
Cow position: chr24:28699769-28699914 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 209-346
Cow position: chr24:35073806-35073949 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 219-346
Cow position: chr24:19769222-19769350 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 77

Conread position: 221-344
Cow position: chr24:18390562-18390434 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 33, 78

Show alignments to all cow chromosomes.