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Cow genome map

           
Conread name:
           
Ovi1-UMC-pd3ov2-001-c12
        

               
Conread position:
               
1-113
               

               
Cow position:
               
chr16:45676999-45676885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr16:53037770-53037644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chr16:35168582-35168738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 76
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr16:23033712-23033866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr16:39417264-39417100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 117
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr16:24148011-24148214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr16:28191923-28192119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 117
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr16:8279932-8279724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr16:35937193-35937408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr16:39514222-39513988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr16:47643270-47643502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr16:10352724-10352981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr16:5636442-5636690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr16:26649776-26649522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr16:41697234-41696984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr16:56231680-56231935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
41, 94
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr16:4626538-4626279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
41, 83
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr16:15824591-15824330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr16:32781219-32781477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
41, 122
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr16:38708977-38708722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr16:42345750-42345498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 75
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr16:5836436-5836702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
156, 42
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr16:39165097-39165356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr16:10148130-10148399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 240
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr16:33198581-33198316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
41, 76
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr16:51500787-51501052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
41, 94
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr16:31079244-31078966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 128
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr16:11806529-11806798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr16:50289002-50289274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 238
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr16:54679522-54679790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr16:7504941-7505211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
41, 209
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr16:9985533-9985266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
218, 43
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr16:12320075-12320351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 86
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr16:19003663-19003407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
41, 70
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr16:32970225-32969954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 159
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr16:47820427-47820696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr16:48095908-48095635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr16:49126332-49126058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
214, 37
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr16:41752720-41752456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
5, 86
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr16:47964962-47964688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr16:48006634-48006360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
112, 43
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr16:48340842-48340562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr16:51598752-51598480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr16:4857238-4856970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr16:8366967-8366697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr16:17945375-17945658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 0
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr16:31348914-31348631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 208
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr16:33704660-33704937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
41, 124
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr16:52133662-52133383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr16:23681223-23681496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr16:33226685-33226403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
40, 117
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr16:30037138-30036855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 122
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr16:45813848-45813564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr16:5256853-5257134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr16:45677840-45678119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
108, 40
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr16:48370094-48369808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr16:3303885-3304170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr16:9973645-9973341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 111
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr16:13611598-13611303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr16:24825925-24826233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
41, 127
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr16:19408663-19408362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr16:25386834-25387144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
37, 66
               

               
Conread position:
               
2-104
               

               
Cow position:
               
chr16:49125674-49125570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
2-128
               

               
Cow position:
               
chr16:21905020-21905144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr16:3246352-3246139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
2-214
               

               
Cow position:
               
chr16:24672503-24672291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
2-215
               

               
Cow position:
               
chr16:9136030-9136236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
35, 127
               

               
Conread position:
               
2-254
               

               
Cow position:
               
chr16:14125008-14125244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
215, 32
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr16:8240011-8239755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr16:17288795-17289061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
40, 122
               

               
Conread position:
               
2-267
               

               
Cow position:
               
chr16:48494699-48494432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 0
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr16:13195487-13195217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 211
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr16:2223549-2223271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
29, 167
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr16:14568627-14568362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 83
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr16:17745689-17745962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr16:49169531-49169255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr16:16597420-16597683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
217, 27
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr16:25170245-25170521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr16:52275276-52275001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr16:54579024-54579293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr16:11102970-11102692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
35, 237
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr16:12273922-12274193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 222
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr16:14758586-14758866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 166
               

               
Conread position:
               
2-277
               

               
Cow position:
               
chr16:25839473-25839752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr16:8076654-8076371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 238
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr16:16265245-16264971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr16:43105659-43105384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chr16:14242226-14242501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 59
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chr16:17626784-17627063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 116
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr16:4910677-4910390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 156
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr16:5363750-5364034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
40, 269
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr16:10592289-10592569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr16:17142790-17143066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 139
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr16:38243808-38243532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr16:40562085-40562366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 249
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr16:14685535-14685256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr16:33645869-33646150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr16:49229917-49229635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
37, 153
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr16:53627573-53627289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 122
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr16:39616597-39616872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr16:28833693-28834005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
2-324
               

               
Cow position:
               
chr16:20025301-20025616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
37, 116
               

               
Conread position:
               
2-335
               

               
Cow position:
               
chr16:11790871-11791197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
3-112
               

               
Cow position:
               
chr16:49141709-49141598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
3-128
               

               
Cow position:
               
chr16:47620236-47620364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 122
               

               
Conread position:
               
3-129
               

               
Cow position:
               
chr16:39385263-39385392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
3-138
               

               
Cow position:
               
chr16:47017389-47017255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 79
               

               
Conread position:
               
3-189
               

               
Cow position:
               
chr16:10651035-10650846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
37, 116
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr16:13233093-13232881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr16:23738034-23738294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr16:8812227-8811982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr16:41689551-41689807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr16:42340051-42340310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr16:43801064-43800803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 140
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr16:18402540-18402805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
37, 232
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr16:52835028-52834767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr16:12361121-12360851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
36, 257
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr16:30715351-30715628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr16:820103-820380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr16:11105408-11105678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
39, 268
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr16:13689520-13689792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr16:26373099-26372828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 121
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr16:7418239-7418504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
39, 120
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr16:42242261-42241993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 115
               

               
Conread position:
               
3-275
               

               
Cow position:
               
chr16:11008200-11008468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 223
               

               
Conread position:
               
3-275
               

               
Cow position:
               
chr16:14754467-14754193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 114
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr16:20634023-20633744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
28, 139
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr16:45139527-45139799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
36, 115
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr16:11957729-11957443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr16:12060272-12060551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 105
               

               
Conread position:
               
4-123
               

               
Cow position:
               
chr16:16424747-16424626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
4-127
               

               
Cow position:
               
chr16:15808831-15808956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr16:4699124-4698888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr16:48398396-48398148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 58
               

               
Conread position:
               
4-262
               

               
Cow position:
               
chr16:48493035-48493297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr16:37669880-37669619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr16:23472603-23472874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 115
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr16:53509130-53508855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
33, 118
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr16:14106502-14106776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr16:42078984-42078713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
42, 111
               

               
Conread position:
               
4-305
               

               
Cow position:
               
chr16:18679053-18679346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
36, 163
               

               
Conread position:
               
5-260
               

               
Cow position:
               
chr16:8068961-8068710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
214, 160
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chr16:20069685-20069954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
5-271
               

               
Cow position:
               
chr16:39474280-39474029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
214, 34
               

               
Conread position:
               
5-272
               

               
Cow position:
               
chr16:46433470-46433197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr16:7665492-7665772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr16:13307006-13306736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr16:56565453-56565732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
26, 115
               

               
Conread position:
               
6-271
               

               
Cow position:
               
chr16:18205819-18206084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
7-278
               

               
Cow position:
               
chr16:9904952-9905222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
101, 110
               

               
Conread position:
               
7-298
               

               
Cow position:
               
chr16:22842200-22841906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 206
               

               
Conread position:
               
8-269
               

               
Cow position:
               
chr16:24855402-24855663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
33, 159
               

               
Conread position:
               
8-273
               

               
Cow position:
               
chr16:238126-238397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 151
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr16:42444016-42444292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr16:12633746-12634021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
8-306
               

               
Cow position:
               
chr16:29608379-29608661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
8-306
               

               
Cow position:
               
chr16:54083895-54084204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
9-114
               

               
Cow position:
               
chr16:12106743-12106850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
9-156
               

               
Cow position:
               
chr16:11568256-11568109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
9-156
               

               
Cow position:
               
chr16:23810774-23810920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr16:54710172-54709925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chr16:21450706-21450944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
10-260
               

               
Cow position:
               
chr16:41578088-41578340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 122
               

               
Conread position:
               
10-271
               

               
Cow position:
               
chr16:47854805-47855064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
11-107
               

               
Cow position:
               
chr16:33986716-33986618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
11-272
               

               
Cow position:
               
chr16:13989845-13990100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
11-272
               

               
Cow position:
               
chr16:17282528-17282785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
14-280
               

               
Cow position:
               
chr16:4059221-4059490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 220
               

               
Conread position:
               
14-306
               

               
Cow position:
               
chr16:35188120-35188409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 104
               

               
Conread position:
               
16-253
               

               
Cow position:
               
chr16:48146789-48146552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
16-283
               

               
Cow position:
               
chr16:36203749-36203482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
16-299
               

               
Cow position:
               
chr16:31117746-31117465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
18-275
               

               
Cow position:
               
chr16:45554313-45554569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
18-288
               

               
Cow position:
               
chr16:8737935-8738208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
21-307
               

               
Cow position:
               
chr16:39172282-39171987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 57
               

               
Conread position:
               
25-272
               

               
Cow position:
               
chr16:21317716-21317466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
87, 55
               

               
Conread position:
               
25-333
               

               
Cow position:
               
chr16:7075791-7076099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
17, 140
               

               
Conread position:
               
26-303
               

               
Cow position:
               
chr16:21762093-21761814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
16, 245
               

               
Conread position:
               
27-324
               

               
Cow position:
               
chr16:21039910-21040216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 17
               

               
Conread position:
               
29-271
               

               
Cow position:
               
chr16:34754079-34753836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
13, 95
               

               
Conread position:
               
30-288
               

               
Cow position:
               
chr16:8462195-8461939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
31-260
               

               
Cow position:
               
chr16:13578976-13578747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
185, 91
               

               
Conread position:
               
31-260
               

               
Cow position:
               
chr16:54226715-54226486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
9, 154
               

               
Conread position:
               
31-270
               

               
Cow position:
               
chr16:45731501-45731268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
31-280
               

               
Cow position:
               
chr16:17903766-17903512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 239
               

               
Conread position:
               
35-268
               

               
Cow position:
               
chr16:40514591-40514359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
137, 80
               

               
Conread position:
               
38-268
               

               
Cow position:
               
chr16:16570807-16571034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
181, 73
               

               
Conread position:
               
38-279
               

               
Cow position:
               
chr16:45121931-45122169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
181, 60
               

               
Conread position:
               
38-279
               

               
Cow position:
               
chr16:56796773-56796532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
181, 78
               

               
Conread position:
               
38-293
               

               
Cow position:
               
chr16:11939934-11940184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
179, 64
               

               
Conread position:
               
43-306
               

               
Cow position:
               
chr16:3114434-3114699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
15, 244
               

               
Conread position:
               
50-274
               

               
Cow position:
               
chr16:32807388-32807164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
169, 130
               

               
Conread position:
               
50-280
               

               
Cow position:
               
chr16:33054579-33054346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
63, 113
               

               
Conread position:
               
50-298
               

               
Cow position:
               
chr16:30036139-30036374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
66-305
               

               
Cow position:
               
chr16:40700808-40700580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
151, 39
               

               
Conread position:
               
67-281
               

               
Cow position:
               
chr16:30305893-30305680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 117
               

               
Conread position:
               
77-306
               

               
Cow position:
               
chr16:7980723-7980948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
143, 88
               

               
Conread position:
               
79-272
               

               
Cow position:
               
chr16:31561685-31561882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
79-278
               

               
Cow position:
               
chr16:11135049-11134851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
140, 177
               

               
Conread position:
               
124-281
               

               
Cow position:
               
chr16:15945279-15945117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               
Show alignments to all cow chromosomes.