Cow genome map

Conread name: Ovi1-UMC-pd3ov2-001-c12

Conread position: 1-128
Cow position: chr25:7329399-7329527 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 41, 72

Conread position: 1-151
Cow position: chr25:35340183-35340331 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 75

Conread position: 1-154
Cow position: chr25:35333009-35333163 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 36, 114

Conread position: 1-162
Cow position: chr25:20211227-20211068 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 82, 0

Conread position: 1-172
Cow position: chr25:7800991-7801163 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 41, 60

Conread position: 1-240
Cow position: chr25:15377179-15377417 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 161
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 38, 64

Conread position: 1-246
Cow position: chr25:26523816-26524053 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 85

Conread position: 1-251
Cow position: chr25:36036929-36036677 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 41, 87

Conread position: 1-254
Cow position: chr25:4681088-4681331 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 172
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 218, 43

Conread position: 1-254
Cow position: chr25:12778677-12778436 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 38, 57

Conread position: 1-254
Cow position: chr25:17975516-17975273 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 75

Conread position: 1-254
Cow position: chr25:22315054-22315310 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 37, 64

Conread position: 1-259
Cow position: chr25:36081728-36081985 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 117

Conread position: 1-260
Cow position: chr25:4521983-4521730 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 41, 66

Conread position: 1-260
Cow position: chr25:6961302-6961042 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 185
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 21

Conread position: 1-260
Cow position: chr25:25051529-25051266 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 8

Conread position: 1-260
Cow position: chr25:26679079-26679337 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 40, 113

Conread position: 1-262
Cow position: chr25:2136202-2136464 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 162

Conread position: 1-265
Cow position: chr25:30852608-30852883 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 194
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 41, 60

Conread position: 1-268
Cow position: chr25:26089963-26089695 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 192
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 76

Conread position: 1-270
Cow position: chr25:24572922-24573185 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 40, 19

Conread position: 1-271
Cow position: chr25:788116-788381 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 181
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 65

Conread position: 1-271
Cow position: chr25:20785733-20785466 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 41, 24

Conread position: 1-271
Cow position: chr25:21668097-21668372 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 141

Conread position: 1-272
Cow position: chr25:15714736-15714997 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 191
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 106, 41

Conread position: 1-272
Cow position: chr25:23245158-23244879 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 40, 120

Conread position: 1-272
Cow position: chr25:41151109-41150839 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 38, 69

Conread position: 1-274
Cow position: chr25:6683210-6682935 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 41, 16

Conread position: 1-278
Cow position: chr25:13272424-13272700 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 105, 43

Conread position: 1-278
Cow position: chr25:15254480-15254218 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 41, 52

Conread position: 1-278
Cow position: chr25:19129704-19129985 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 123

Conread position: 1-278
Cow position: chr25:19679197-19679483 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 40, 49

Conread position: 1-279
Cow position: chr25:35347759-35348038 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 41, 112

Conread position: 1-281
Cow position: chr25:3992645-3992912 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 187
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 218, 44

Conread position: 1-281
Cow position: chr25:8120631-8120913 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 27, 96

Conread position: 1-281
Cow position: chr25:33550360-33550643 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 41, 116

Conread position: 1-299
Cow position: chr25:19478543-19478821 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 41, 55

Conread position: 2-122
Cow position: chr25:16001672-16001550 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 2-173
Cow position: chr25:9642209-9642381 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 32, 87

Conread position: 2-177
Cow position: chr25:2414671-2414842 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 105, 42

Conread position: 2-205
Cow position: chr25:16570466-16570657 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 8, 32

Conread position: 2-259
Cow position: chr25:8961626-8961880 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 172
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 73

Conread position: 2-260
Cow position: chr25:20133460-20133205 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 157

Conread position: 2-267
Cow position: chr25:36746590-36746332 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 41, 63

Conread position: 2-268
Cow position: chr25:14720607-14720863 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 40, 64

Conread position: 2-270
Cow position: chr25:21191343-21191610 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 218, 42

Conread position: 2-271
Cow position: chr25:18905737-18906006 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 181
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 35, 117

Conread position: 2-272
Cow position: chr25:7216683-7216948 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 37, 65

Conread position: 2-272
Cow position: chr25:21893190-21893461 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 183
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 37, 16

Conread position: 2-277
Cow position: chr25:12117136-12116872 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 38, 72

Conread position: 2-279
Cow position: chr25:6474243-6473956 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 195
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 35, 167

Conread position: 2-280
Cow position: chr25:11585374-11585648 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 192
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 217, 36

Conread position: 2-280
Cow position: chr25:30618918-30619195 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 37

Conread position: 2-286
Cow position: chr25:1838089-1838379 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 194
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 35, 116

Conread position: 2-323
Cow position: chr25:21895034-21894708 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 215
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 36, 195

Conread position: 3-127
Cow position: chr25:12899611-12899735 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 39, 20

Conread position: 3-155
Cow position: chr25:11054758-11054909 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 83

Conread position: 3-248
Cow position: chr25:16319277-16319041 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 41

Conread position: 3-260
Cow position: chr25:30279350-30279097 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 39, 18

Conread position: 3-263
Cow position: chr25:22751156-22750893 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 116

Conread position: 3-268
Cow position: chr25:11661963-11661696 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 121

Conread position: 3-271
Cow position: chr25:12319494-12319230 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 183

Conread position: 3-272
Cow position: chr25:17190887-17190623 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 181
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 85, 41

Conread position: 3-280
Cow position: chr25:12609198-12609471 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 75

Conread position: 3-280
Cow position: chr25:28188095-28187815 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 191
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 131

Conread position: 3-281
Cow position: chr25:14791607-14791886 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 37, 183

Conread position: 4-260
Cow position: chr25:32191525-32191765 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 30, 66

Conread position: 4-281
Cow position: chr25:23829265-23828998 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 215, 32

Conread position: 4-303
Cow position: chr25:22531141-22531432 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 219
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 38, 17

Conread position: 5-271
Cow position: chr25:7750311-7750575 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 186
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 39, 54

Conread position: 5-275
Cow position: chr25:18721260-18720995 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 11, 67

Conread position: 5-281
Cow position: chr25:20007990-20008266 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 191
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 35, 90

Conread position: 8-128
Cow position: chr25:26654767-26654889 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 116

Conread position: 8-271
Cow position: chr25:24669578-24669326 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 34, 110

Conread position: 8-272
Cow position: chr25:20023531-20023262 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 33, 0

Conread position: 8-275
Cow position: chr25:7641592-7641323 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 181
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 34, 57

Conread position: 8-277
Cow position: chr25:16064747-16065017 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 177
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 29, 226

Conread position: 9-144
Cow position: chr25:12824162-12824023 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 9-147
Cow position: chr25:8347363-8347509 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 9-171
Cow position: chr25:36033297-36033461 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 31, 126

Conread position: 9-267
Cow position: chr25:27531413-27531152 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 56

Conread position: 9-270
Cow position: chr25:34979008-34978743 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 33, 70

Conread position: 10-280
Cow position: chr25:13566823-13567099 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 179
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 150

Conread position: 11-228
Cow position: chr25:24051824-24052044 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 76

Conread position: 12-305
Cow position: chr25:34169816-34170097 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 30, 47

Conread position: 15-254
Cow position: chr25:11436941-11436702 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 75, 29

Conread position: 15-268
Cow position: chr25:19364193-19363939 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 29, 15

Conread position: 17-115
Cow position: chr25:7449675-7449775 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 17-268
Cow position: chr25:14157489-14157745 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 25, 105

Conread position: 24-260
Cow position: chr25:33457604-33457843 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 16, 0

Conread position: 24-323
Cow position: chr25:12252936-12252639 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 195
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 87, 149

Conread position: 25-271
Cow position: chr25:11051405-11051649 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 26

Conread position: 25-322
Cow position: chr25:9843052-9843351 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 17, 5

Conread position: 29-272
Cow position: chr25:33557153-33557391 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 166
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 112

Conread position: 31-271
Cow position: chr25:11433072-11432822 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 8, 0

Conread position: 38-279
Cow position: chr25:36872252-36872489 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 181, 82

Conread position: 54-281
Cow position: chr25:4947869-4948095 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 151
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 166, 43

Conread position: 61-260
Cow position: chr25:7799466-7799658 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 158, 50

Conread position: 62-281
Cow position: chr25:13621445-13621230 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 48, 122

Conread position: 67-302
Cow position: chr25:40931194-40931428 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 50, 31

Show alignments to all cow chromosomes.