Cow genome map
| Conread name: | Ovi1-UMC-pd3ov2-001-c12 |
| Conread position: | 1-160 |
| Cow position: | chr26:24280698-24280852 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-163 |
| Cow position: | chr26:31572122-31572278 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 72 |
| Conread position: | 1-171 |
| Cow position: | chr26:28760218-28760051 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 52 |
| Conread position: | 1-192 |
| Cow position: | chr26:5307006-5307204 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-254 |
| Cow position: | chr26:25393901-25394163 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 41, 239 |
| Conread position: | 1-263 |
| Cow position: | chr26:26950575-26950320 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 1-266 |
| Cow position: | chr26:21637163-21636902 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 1-266 |
| Cow position: | chr26:34847612-34847879 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 41, 158 |
| Conread position: | 1-270 |
| Cow position: | chr26:17148574-17148843 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 41, 128 |
| Conread position: | 1-271 |
| Cow position: | chr26:9535388-9535658 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 1-271 |
| Cow position: | chr26:22892574-22892303 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 7, 59 |
| Conread position: | 1-271 |
| Cow position: | chr26:26888260-26887995 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 1-272 |
| Cow position: | chr26:19110055-19110327 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 1-272 |
| Cow position: | chr26:22249608-22249340 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 38, 113 |
| Conread position: | 1-272 |
| Cow position: | chr26:23583076-23582805 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 41, 122 |
| Conread position: | 1-272 |
| Cow position: | chr26:33112512-33112242 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 1-274 |
| Cow position: | chr26:9491796-9492066 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 1-274 |
| Cow position: | chr26:20769725-20769996 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 40, 58 |
| Conread position: | 1-279 |
| Cow position: | chr26:19445997-19446280 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 58 |
| Conread position: | 1-280 |
| Cow position: | chr26:12964826-12964546 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 184 |
| Conread position: | 1-280 |
| Cow position: | chr26:27491631-27491350 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 35, 125 |
| Conread position: | 1-281 |
| Cow position: | chr26:16721738-16722014 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 1-281 |
| Cow position: | chr26:16783694-16783975 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 39, 76 |
| Conread position: | 1-282 |
| Cow position: | chr26:8307641-8307377 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 219, 33 |
| Conread position: | 1-285 |
| Cow position: | chr26:23315640-23315928 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 39, 266 |
| Conread position: | 1-288 |
| Cow position: | chr26:20291812-20291536 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 1-305 |
| Cow position: | chr26:13021275-13020970 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 41, 121 |
| Conread position: | 2-109 |
| Cow position: | chr26:10768040-10767931 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-113 |
| Cow position: | chr26:9867246-9867133 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-114 |
| Cow position: | chr26:32013498-32013613 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-132 |
| Cow position: | chr26:16549856-16549989 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-269 |
| Cow position: | chr26:32652855-32652596 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 64 |
| Conread position: | 2-271 |
| Cow position: | chr26:32898000-32897735 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 40, 213 |
| Conread position: | 2-272 |
| Cow position: | chr26:28251017-28251298 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-274 |
| Cow position: | chr26:22354284-22354559 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 117 |
| Conread position: | 2-280 |
| Cow position: | chr26:31633597-31633879 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 29, 119 |
| Conread position: | 2-280 |
| Cow position: | chr26:32776641-32776360 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 126 |
| Conread position: | 2-281 |
| Cow position: | chr26:8700175-8699894 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 2-281 |
| Cow position: | chr26:20260448-20260732 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 151 |
| Conread position: | 2-296 |
| Cow position: | chr26:31605277-31605572 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 140 |
| Conread position: | 3-262 |
| Cow position: | chr26:6475558-6475296 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 218 |
| Conread position: | 3-262 |
| Cow position: | chr26:34108635-34108890 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 84 |
| Conread position: | 3-271 |
| Cow position: | chr26:33736678-33736411 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 3-280 |
| Cow position: | chr26:34060205-34060483 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 3-282 |
| Cow position: | chr26:7315230-7314955 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 3-325 |
| Cow position: | chr26:18825409-18825088 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 4-281 |
| Cow position: | chr26:12145246-12144966 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 38, 63 |
| Conread position: | 4-285 |
| Cow position: | chr26:31903037-31903323 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 112 |
| Conread position: | 4-307 |
| Cow position: | chr26:11263514-11263814 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 105 |
| Conread position: | 5-260 |
| Cow position: | chr26:8642817-8643071 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 156 |
| Conread position: | 5-260 |
| Cow position: | chr26:33567171-33566914 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 5-271 |
| Cow position: | chr26:34314563-34314832 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 6-260 |
| Cow position: | chr26:647845-647596 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 6-279 |
| Cow position: | chr26:8811005-8811273 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 114 |
| Conread position: | 8-128 |
| Cow position: | chr26:23926109-23925988 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 115 |
| Conread position: | 8-168 |
| Cow position: | chr26:10747749-10747593 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 34, 86 |
| Conread position: | 9-177 |
| Cow position: | chr26:6029896-6029726 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 74 |
| Conread position: | 9-267 |
| Cow position: | chr26:35704268-35704524 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 9-271 |
| Cow position: | chr26:25526125-25526391 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 213 |
| Conread position: | 9-305 |
| Cow position: | chr26:19774425-19774125 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 127 |
| Conread position: | 10-281 |
| Cow position: | chr26:12893542-12893279 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 209, 34 |
| Conread position: | 14-155 |
| Cow position: | chr26:8341338-8341479 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-257 |
| Cow position: | chr26:18651750-18651511 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 23-238 |
| Cow position: | chr26:32832079-32832292 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 24-277 |
| Cow position: | chr26:24240569-24240827 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 18, 163 |
| Conread position: | 24-281 |
| Cow position: | chr26:34724982-34724724 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 25-252 |
| Cow position: | chr26:32955738-32955508 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 92 |
| Conread position: | 37-305 |
| Cow position: | chr26:6864924-6865200 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 38-268 |
| Cow position: | chr26:14481639-14481417 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 38-275 |
| Cow position: | chr26:6514751-6514988 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 107, 74 |
| Conread position: | 38-299 |
| Cow position: | chr26:678070-677813 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 181, 47 |
| Conread position: | 39-267 |
| Cow position: | chr26:7687330-7687106 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 180, 67 |
| Conread position: | 88-333 |
| Cow position: | chr26:32863709-32863469 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 131, 103 |
| Conread position: | 96-271 |
| Cow position: | chr26:34560203-34560029 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 63 |
Show alignments to all cow chromosomes.