Cow genome map

Conread name: Ovi1-UMC-pd3ov2-001-c12

Conread position: 1-112
Cow position: chr29:21000495-21000608 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1-114
Cow position: chr29:26734883-26734995 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 104, 92

Conread position: 1-128
Cow position: chr29:9686150-9686021 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 1-195
Cow position: chr29:1124507-1124700 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 116

Conread position: 1-244
Cow position: chr29:43009230-43008989 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 107

Conread position: 1-247
Cow position: chr29:31674482-31674730 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 38, 86

Conread position: 1-251
Cow position: chr29:27826378-27826622 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 73

Conread position: 1-251
Cow position: chr29:43328492-43328746 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 41, 124

Conread position: 1-254
Cow position: chr29:28446404-28446151 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 41, 157

Conread position: 1-255
Cow position: chr29:26275469-26275712 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 218, 36

Conread position: 1-256
Cow position: chr29:26615870-26615610 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 40, 117

Conread position: 1-259
Cow position: chr29:42364162-42363906 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 41, 94

Conread position: 1-260
Cow position: chr29:17607272-17607527 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 182
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 41, 59

Conread position: 1-260
Cow position: chr29:27588775-27589034 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 40, 86

Conread position: 1-260
Cow position: chr29:29176761-29176506 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 19

Conread position: 1-260
Cow position: chr29:41811730-41811479 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 218, 43

Conread position: 1-263
Cow position: chr29:9912024-9912289 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 173
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 30, 237

Conread position: 1-270
Cow position: chr29:22162401-22162131 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 41, 259

Conread position: 1-270
Cow position: chr29:28197154-28196889 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 24, 35

Conread position: 1-271
Cow position: chr29:34773882-34773612 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 183
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 114

Conread position: 1-271
Cow position: chr29:36530719-36530991 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 41, 86

Conread position: 1-272
Cow position: chr29:25737566-25737291 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 38, 0

Conread position: 1-278
Cow position: chr29:25091964-25092236 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 38, 93

Conread position: 1-280
Cow position: chr29:12784105-12783833 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 190
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 114

Conread position: 1-280
Cow position: chr29:22714872-22714592 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 193
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 123

Conread position: 1-280
Cow position: chr29:32211204-32210941 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 39, 87

Conread position: 1-280
Cow position: chr29:45005771-45005495 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 41, 19

Conread position: 1-281
Cow position: chr29:10818583-10818319 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 39, 120

Conread position: 1-284
Cow position: chr29:9718917-9718635 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 196
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 60

Conread position: 1-298
Cow position: chr29:4480320-4480030 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 40, 89

Conread position: 2-128
Cow position: chr29:3395959-3396086 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 37, 112

Conread position: 2-231
Cow position: chr29:44682244-44682022 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 38, 53

Conread position: 2-246
Cow position: chr29:2984737-2984987 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 29, 126

Conread position: 2-246
Cow position: chr29:28868489-28868740 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 85

Conread position: 2-270
Cow position: chr29:29769498-29769230 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 38, 106

Conread position: 2-272
Cow position: chr29:4875040-4874756 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 197
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 38, 0

Conread position: 2-272
Cow position: chr29:13639517-13639242 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 189
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 38, 93

Conread position: 2-272
Cow position: chr29:19949166-19949431 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 96, 29

Conread position: 2-272
Cow position: chr29:22778325-22778050 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 179
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 117

Conread position: 2-272
Cow position: chr29:35501798-35501531 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 40, 81

Conread position: 2-272
Cow position: chr29:39111462-39111192 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 40, 206

Conread position: 2-275
Cow position: chr29:35291943-35292219 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 183
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 38, 63

Conread position: 2-279
Cow position: chr29:10838803-10839070 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 41, 116

Conread position: 2-280
Cow position: chr29:4520188-4520464 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 38, 166

Conread position: 2-280
Cow position: chr29:32799859-32799581 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 29, 120

Conread position: 2-281
Cow position: chr29:12025618-12025343 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 190
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 33, 165

Conread position: 2-304
Cow position: chr29:23244027-23243723 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 139

Conread position: 2-306
Cow position: chr29:1325294-1325596 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 207
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 32, 121

Conread position: 2-323
Cow position: chr29:26416213-26416523 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 206
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 102, 57

Conread position: 3-205
Cow position: chr29:10456705-10456510 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 105

Conread position: 3-222
Cow position: chr29:24103691-24103468 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 39, 92

Conread position: 3-247
Cow position: chr29:23984105-23983857 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 139

Conread position: 3-249
Cow position: chr29:10235275-10235034 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 133, 41

Conread position: 3-260
Cow position: chr29:19762130-19762379 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 31, 71

Conread position: 3-260
Cow position: chr29:36216971-36217223 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 39, 95

Conread position: 3-269
Cow position: chr29:28195660-28195402 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 181
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 115

Conread position: 3-269
Cow position: chr29:31594276-31594026 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 109

Conread position: 3-272
Cow position: chr29:17109822-17110081 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 92

Conread position: 3-280
Cow position: chr29:29314801-29314530 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 194
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 38, 215

Conread position: 3-281
Cow position: chr29:24624105-24624380 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 186
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 22

Conread position: 3-285
Cow position: chr29:9709550-9709829 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 189
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 39, 114

Conread position: 3-293
Cow position: chr29:5186641-5186343 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 210
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 39, 71

Conread position: 4-222
Cow position: chr29:40166100-40166317 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 8, 74

Conread position: 4-271
Cow position: chr29:40763823-40763571 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 67

Conread position: 4-278
Cow position: chr29:16657543-16657823 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 187
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 219

Conread position: 4-304
Cow position: chr29:20903429-20903136 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 35, 82

Conread position: 5-279
Cow position: chr29:12680014-12680285 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 193
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 37, 103

Conread position: 5-299
Cow position: chr29:38580835-38581127 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 188
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 16

Conread position: 5-306
Cow position: chr29:10156449-10156149 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 36, 120

Conread position: 8-130
Cow position: chr29:18462696-18462577 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 69

Conread position: 8-278
Cow position: chr29:22613285-22613555 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 34, 223

Conread position: 8-284
Cow position: chr29:2055916-2056196 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 180
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 31, 215

Conread position: 8-307
Cow position: chr29:11562474-11562763 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 200
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 33, 79

Conread position: 9-270
Cow position: chr29:39567547-39567802 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 22, 107

Conread position: 10-251
Cow position: chr29:27329753-27329994 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 32, 108

Conread position: 12-270
Cow position: chr29:10058673-10058416 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 30, 66

Conread position: 17-309
Cow position: chr29:25333593-25333303 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 196
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 23, 18

Conread position: 21-272
Cow position: chr29:34359108-34358854 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 21, 58

Conread position: 32-271
Cow position: chr29:5063031-5063268 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 18, 101

Conread position: 38-271
Cow position: chr29:1007707-1007943 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 159
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 85, 116

Conread position: 44-251
Cow position: chr29:24578755-24578965 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 62-269
Cow position: chr29:20770258-20770465 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 52, 122

Conread position: 67-251
Cow position: chr29:18012474-18012660 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 127
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 67-295
Cow position: chr29:18085489-18085723 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 152, 0

Conread position: 68-282
Cow position: chr29:30548694-30548908 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 151, 195

Conread position: 71-299
Cow position: chr29:28840077-28840304 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 53

Conread position: 76-290
Cow position: chr29:23220573-23220359 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 187, 141

Conread position: 81-260
Cow position: chr29:44139312-44139133 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 138, 129

Conread position: 92-295
Cow position: chr29:40873953-40874158 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 125, 192

Conread position: 117-280
Cow position: chr29:26540573-26540410 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 102, 132

Show alignments to all cow chromosomes.