Cow genome map

Conread name: Ovi1-UMC-pd3ov3-006-e05

Conread position: 1-201
Cow position: chr1:29039246-29039038 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 206

Conread position: 1-237
Cow position: chr1:84227012-84226769 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 42, 0

Conread position: 1-255
Cow position: chr1:67833926-67834190 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 121, 45

Conread position: 1-268
Cow position: chr1:53199748-53199470 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 201
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 48, 69

Conread position: 1-268
Cow position: chr1:61310426-61310152 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 200
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 38, 166

Conread position: 1-268
Cow position: chr1:82653869-82653595 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 43, 0

Conread position: 1-268
Cow position: chr1:85792884-85792610 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 38, 0

Conread position: 1-268
Cow position: chr1:91900229-91899949 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 38, 0

Conread position: 1-269
Cow position: chr1:79455749-79456019 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 47, 246

Conread position: 1-288
Cow position: chr1:34693887-34693600 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 155

Conread position: 1-298
Cow position: chr1:72038360-72038673 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 47, 74

Conread position: 1-304
Cow position: chr1:57696955-57697273 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 1-312
Cow position: chr1:11290908-11291230 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 226
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 62

Conread position: 1-316
Cow position: chr1:5356331-5356005 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 227
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 38, 0

Conread position: 1-316
Cow position: chr1:17011529-17011854 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 38, 248

Conread position: 1-316
Cow position: chr1:30282494-30282822 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 231
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 38, 0

Conread position: 1-316
Cow position: chr1:86595289-86595618 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 233
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 38, 168

Conread position: 1-316
Cow position: chr1:97495762-97496086 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 234
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 43, 264

Conread position: 1-320
Cow position: chr1:18241312-18241645 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 14

Conread position: 1-320
Cow position: chr1:59208942-59209275 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 228
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 38, 0

Conread position: 1-320
Cow position: chr1:60340501-60340174 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 237
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 39, 76

Conread position: 1-321
Cow position: chr1:56192959-56193294 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 314

Conread position: 1-322
Cow position: chr1:73197819-73198152 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 235
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 42, 116

Conread position: 1-323
Cow position: chr1:3384818-3385153 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-323
Cow position: chr1:8826250-8825919 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 1-323
Cow position: chr1:12061008-12061342 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-323
Cow position: chr1:26517682-26518014 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 243

Conread position: 1-323
Cow position: chr1:30533816-30534146 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 307

Conread position: 1-323
Cow position: chr1:48247045-48246704 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 1-323
Cow position: chr1:55320875-55321201 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 27

Conread position: 1-323
Cow position: chr1:62804966-62805309 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 1-323
Cow position: chr1:65387525-65387191 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-323
Cow position: chr1:69404209-69403878 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 14

Conread position: 1-323
Cow position: chr1:69921229-69921563 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 1-323
Cow position: chr1:74285584-74285918 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-323
Cow position: chr1:99914631-99914295 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-323
Cow position: chr1:102433837-102434166 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 33

Conread position: 1-326
Cow position: chr1:24652483-24652155 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 282

Conread position: 1-331
Cow position: chr1:77115510-77115840 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 82

Conread position: 1-331
Cow position: chr1:94660879-94660538 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 1-336
Cow position: chr1:31364893-31365230 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 286

Conread position: 1-336
Cow position: chr1:33552132-33551786 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 341

Conread position: 1-336
Cow position: chr1:57658093-57657744 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 119

Conread position: 1-336
Cow position: chr1:88269031-88269379 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 72

Conread position: 1-336
Cow position: chr1:102781095-102781436 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 121

Conread position: 2-298
Cow position: chr1:52358054-52358362 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 80

Conread position: 2-305
Cow position: chr1:89769507-89769822 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 204
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 244

Conread position: 2-323
Cow position: chr1:58882565-58882911 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 241
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 7, 0

Conread position: 2-323
Cow position: chr1:72081980-72081638 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 3-320
Cow position: chr1:43570212-43570543 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 10-313
Cow position: chr1:31417303-31417627 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 241
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 38, 5

Conread position: 11-323
Cow position: chr1:62243450-62243768 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 63

Conread position: 15-337
Cow position: chr1:18026606-18026942 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 237
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 105, 0

Conread position: 16-316
Cow position: chr1:31397881-31397570 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 23, 149

Conread position: 16-323
Cow position: chr1:5503158-5502838 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 227
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 0

Conread position: 16-323
Cow position: chr1:25551152-25550833 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 16-323
Cow position: chr1:49972993-49973316 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 16-323
Cow position: chr1:55777770-55777455 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 25

Conread position: 16-326
Cow position: chr1:29363491-29363166 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 223
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 23, 0

Conread position: 16-336
Cow position: chr1:79635788-79636121 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 276

Conread position: 16-337
Cow position: chr1:30519787-30519447 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 244
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 33, 82

Conread position: 17-206
Cow position: chr1:39544981-39544785 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 17-268
Cow position: chr1:80357981-80358245 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 22, 0

Conread position: 17-313
Cow position: chr1:53364745-53364434 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 17-323
Cow position: chr1:6195433-6195106 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 231
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 31, 0

Conread position: 17-326
Cow position: chr1:23052950-23052631 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 29

Conread position: 19-316
Cow position: chr1:20830089-20829789 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 13, 253

Conread position: 20-268
Cow position: chr1:40575402-40575145 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 19, 149

Conread position: 20-323
Cow position: chr1:42737638-42737329 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 11

Conread position: 22-326
Cow position: chr1:58200325-58200642 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 208
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 22-336
Cow position: chr1:98658724-98659048 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 313

Conread position: 22-337
Cow position: chr1:79111668-79111348 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 107, 26

Conread position: 24-311
Cow position: chr1:55155819-55156118 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 27-262
Cow position: chr1:43636853-43636615 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 43

Conread position: 29-331
Cow position: chr1:91446639-91446326 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 214
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 14, 207

Conread position: 40-326
Cow position: chr1:43984918-43985211 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 165
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 96

Conread position: 42-268
Cow position: chr1:33852450-33852218 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 87, 0

Conread position: 42-298
Cow position: chr1:38419833-38419572 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 78, 0

Conread position: 42-316
Cow position: chr1:56164722-56164427 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 81, 118

Conread position: 42-331
Cow position: chr1:76620516-76620821 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 79, 0

Conread position: 42-337
Cow position: chr1:67287986-67287677 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 42-337
Cow position: chr1:88131948-88131630 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 227
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 87, 0

Conread position: 47-336
Cow position: chr1:38417023-38416747 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 105, 27

Conread position: 49-326
Cow position: chr1:18139315-18139587 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 104, 34

Conread position: 51-336
Cow position: chr1:82923027-82923327 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 39, 20

Conread position: 52-326
Cow position: chr1:63502978-63502697 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 90, 67

Conread position: 52-337
Cow position: chr1:1460039-1460340 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 74, 0

Conread position: 53-326
Cow position: chr1:27178323-27178595 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 194
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 107, 79

Conread position: 144-326
Cow position: chr1:24443271-24443462 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 11, 0

Conread position: 156-314
Cow position: chr1:81863460-81863619 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 132
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 5, 52

Show alignments to all cow chromosomes.