Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-205 |
| Cow position: | chr10:53321169-53321374 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 112 |
| Conread position: | 1-206 |
| Cow position: | chr10:20375607-20375815 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 1-226 |
| Cow position: | chr10:60361123-60360890 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 1-268 |
| Cow position: | chr10:21739522-21739795 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 1-268 |
| Cow position: | chr10:28642762-28642488 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 1-268 |
| Cow position: | chr10:41568326-41568054 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 38, 90 |
| Conread position: | 1-268 |
| Cow position: | chr10:41878148-41877872 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-287 |
| Cow position: | chr10:58597598-58597312 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 48, 167 |
| Conread position: | 1-309 |
| Cow position: | chr10:42752359-42752039 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-312 |
| Cow position: | chr10:19840908-19840586 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 1-316 |
| Cow position: | chr10:1665306-1665633 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr10:14805071-14804736 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 1-316 |
| Cow position: | chr10:34286486-34286159 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr10:47908159-47907832 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 1-316 |
| Cow position: | chr10:55094496-55094168 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 38, 167 |
| Conread position: | 1-319 |
| Cow position: | chr10:14862909-14862588 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 1-323 |
| Cow position: | chr10:1378731-1378401 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 1-323 |
| Cow position: | chr10:2119788-2120118 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 158 |
| Conread position: | 1-323 |
| Cow position: | chr10:7280877-7281193 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 1-323 |
| Cow position: | chr10:16926758-16926429 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 47, 270 |
| Conread position: | 1-323 |
| Cow position: | chr10:32701953-32701623 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 188 |
| Conread position: | 1-323 |
| Cow position: | chr10:39040070-39040413 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 1-331 |
| Cow position: | chr10:14334620-14334963 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-334 |
| Cow position: | chr10:50135798-50135444 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 190 |
| Conread position: | 1-337 |
| Cow position: | chr10:38544700-38545031 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 46 |
| Conread position: | 2-323 |
| Cow position: | chr10:38537271-38537602 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 298 |
| Conread position: | 2-336 |
| Cow position: | chr10:29109918-29110258 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 9-316 |
| Cow position: | chr10:17433574-17433247 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 12-293 |
| Cow position: | chr10:64146146-64145855 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 16, 189 |
| Conread position: | 14-269 |
| Cow position: | chr10:21898989-21899248 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 16-235 |
| Cow position: | chr10:31471975-31471748 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 80 |
| Conread position: | 16-316 |
| Cow position: | chr10:27664051-27664363 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 151 |
| Conread position: | 16-337 |
| Cow position: | chr10:38344146-38344480 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 16-337 |
| Cow position: | chr10:57988781-57989111 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 261 |
| Conread position: | 20-336 |
| Cow position: | chr10:28928749-28929074 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 22-269 |
| Cow position: | chr10:51843988-51844240 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 22-337 |
| Cow position: | chr10:8326118-8326439 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 106, 25 |
| Conread position: | 41-268 |
| Cow position: | chr10:19495093-19495326 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 125 |
| Conread position: | 41-316 |
| Cow position: | chr10:21399483-21399770 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 126 |
| Conread position: | 42-312 |
| Cow position: | chr10:40151058-40151340 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 42-326 |
| Cow position: | chr10:3541886-3542175 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 78, 54 |
| Conread position: | 52-323 |
| Cow position: | chr10:19512765-19512488 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 53-336 |
| Cow position: | chr10:58096842-58097132 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 270 |
| Conread position: | 54-331 |
| Cow position: | chr10:8291155-8290864 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 75, 19 |
| Conread position: | 121-326 |
| Cow position: | chr10:26597714-26597506 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 144-323 |
| Cow position: | chr10:125474-125287 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 154-323 |
| Cow position: | chr10:62407775-62407949 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 157-316 |
| Cow position: | chr10:4190747-4190911 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 160-337 |
| Cow position: | chr10:29631704-29631891 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 81 |
Show alignments to all cow chromosomes.