Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-228 |
| Cow position: | chr11:37358157-37357920 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-269 |
| Cow position: | chr11:63654468-63654746 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 60 |
| Conread position: | 1-309 |
| Cow position: | chr11:7110242-7110556 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 292 |
| Conread position: | 1-312 |
| Cow position: | chr11:4056626-4056934 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 11 |
| Conread position: | 1-316 |
| Cow position: | chr11:17106817-17107146 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr11:17547028-17546702 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 1-316 |
| Cow position: | chr11:28109003-28108676 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr11:32452693-32452365 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr11:52420268-52419930 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr11:57627187-57627519 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 171 |
| Conread position: | 1-320 |
| Cow position: | chr11:58135262-58134929 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-323 |
| Cow position: | chr11:4269536-4269870 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-323 |
| Cow position: | chr11:10848316-10847983 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr11:12357548-12357884 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr11:29667740-29668075 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr11:41169828-41170163 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr11:44252663-44252332 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 1-323 |
| Cow position: | chr11:44582469-44582803 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr11:53431184-53431526 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-325 |
| Cow position: | chr11:43513765-43514102 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-326 |
| Cow position: | chr11:9156282-9156628 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-326 |
| Cow position: | chr11:47759412-47759754 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 1-327 |
| Cow position: | chr11:31861767-31861429 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-336 |
| Cow position: | chr11:24336341-24336674 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 128, 21 |
| Conread position: | 1-336 |
| Cow position: | chr11:45921743-45922088 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 233 |
| Conread position: | 1-336 |
| Cow position: | chr11:49558810-49559150 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 22, 204 |
| Conread position: | 1-337 |
| Cow position: | chr11:4063008-4063342 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 1-337 |
| Cow position: | chr11:11988998-11988629 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 128, 41 |
| Conread position: | 1-337 |
| Cow position: | chr11:24394179-24393833 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 173 |
| Conread position: | 3-316 |
| Cow position: | chr11:53286312-53286625 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 36, 5 |
| Conread position: | 15-285 |
| Cow position: | chr11:22935945-22935664 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 103 |
| Conread position: | 15-336 |
| Cow position: | chr11:30122987-30123326 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 15-336 |
| Cow position: | chr11:77253888-77254207 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 16-268 |
| Cow position: | chr11:4034495-4034757 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 16-268 |
| Cow position: | chr11:20733385-20733649 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 16-316 |
| Cow position: | chr11:5342068-5342382 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 151 |
| Conread position: | 16-323 |
| Cow position: | chr11:19101644-19101963 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 16-323 |
| Cow position: | chr11:26124076-26124394 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 16-323 |
| Cow position: | chr11:44156396-44156715 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 17-222 |
| Cow position: | chr11:81851858-81852070 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 195 |
| Conread position: | 17-289 |
| Cow position: | chr11:23127051-23127332 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 31, 80 |
| Conread position: | 17-316 |
| Cow position: | chr11:3493844-3493534 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 188 |
| Conread position: | 17-336 |
| Cow position: | chr11:1489295-1489622 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 19-316 |
| Cow position: | chr11:61400219-61400525 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 13, 97 |
| Conread position: | 22-335 |
| Cow position: | chr11:54484570-54484894 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 24-320 |
| Cow position: | chr11:3856064-3855765 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 16, 88 |
| Conread position: | 27-327 |
| Cow position: | chr11:18887695-18887385 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 104, 39 |
| Conread position: | 33-316 |
| Cow position: | chr11:35254562-35254849 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 124 |
| Conread position: | 33-336 |
| Cow position: | chr11:12094399-12094088 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 49-337 |
| Cow position: | chr11:9216266-9216565 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 71, 111 |
| Conread position: | 50-316 |
| Cow position: | chr11:64081267-64081543 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 79, 115 |
| Conread position: | 52-336 |
| Cow position: | chr11:21444087-21443799 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 105, 32 |
| Conread position: | 53-336 |
| Cow position: | chr11:1495275-1495568 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 76, 286 |
| Conread position: | 56-322 |
| Cow position: | chr11:21902291-21902561 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 79-310 |
| Cow position: | chr11:44491469-44491687 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 142-326 |
| Cow position: | chr11:10091400-10091208 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 155-323 |
| Cow position: | chr11:71981823-71981995 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 186-336 |
| Cow position: | chr11:26070383-26070538 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 148 |
Show alignments to all cow chromosomes.