Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-228 |
| Cow position: | chr14:10147682-10147448 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-244 |
| Cow position: | chr14:45028183-45028431 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 1-257 |
| Cow position: | chr14:30666310-30666048 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 1-268 |
| Cow position: | chr14:29046876-29047151 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 206 |
| Conread position: | 1-268 |
| Cow position: | chr14:30595560-30595832 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 39, 74 |
| Conread position: | 1-297 |
| Cow position: | chr14:46530031-46529731 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 48, 208 |
| Conread position: | 1-316 |
| Cow position: | chr14:751374-751048 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 1-316 |
| Cow position: | chr14:27978169-27977843 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-320 |
| Cow position: | chr14:9046385-9046053 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-320 |
| Cow position: | chr14:37455257-37455582 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 1-323 |
| Cow position: | chr14:11153343-11153682 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-323 |
| Cow position: | chr14:12742259-12742592 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-323 |
| Cow position: | chr14:15275424-15275753 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 218 |
| Conread position: | 1-323 |
| Cow position: | chr14:16918909-16919239 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 1-323 |
| Cow position: | chr14:17000249-17000584 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr14:32447600-32447271 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 1-323 |
| Cow position: | chr14:37225000-37224666 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 311 |
| Conread position: | 1-323 |
| Cow position: | chr14:48601526-48601852 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 55, 78 |
| Conread position: | 1-325 |
| Cow position: | chr14:17686208-17685872 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-326 |
| Cow position: | chr14:17760071-17760406 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 1-326 |
| Cow position: | chr14:33237829-33237499 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 1-326 |
| Cow position: | chr14:33677878-33677537 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 323 |
| Conread position: | 1-326 |
| Cow position: | chr14:45207113-45206795 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 1-326 |
| Cow position: | chr14:48826095-48825754 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-329 |
| Cow position: | chr14:43559044-43558707 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 48, 7 |
| Conread position: | 1-331 |
| Cow position: | chr14:29580975-29580643 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 188 |
| Conread position: | 1-336 |
| Cow position: | chr14:33402500-33402151 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 342 |
| Conread position: | 1-336 |
| Cow position: | chr14:44378607-44378265 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 335 |
| Conread position: | 1-336 |
| Cow position: | chr14:45081863-45081513 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 1-336 |
| Cow position: | chr14:46391722-46392069 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 38, 206 |
| Conread position: | 1-336 |
| Cow position: | chr14:50139372-50139027 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 47, 124 |
| Conread position: | 1-337 |
| Cow position: | chr14:11561215-11561571 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 246 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-337 |
| Cow position: | chr14:44775229-44775577 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 2-313 |
| Cow position: | chr14:37412940-37413259 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 2-323 |
| Cow position: | chr14:19327453-19327794 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 3-335 |
| Cow position: | chr14:9099914-9100257 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 45, 212 |
| Conread position: | 16-337 |
| Cow position: | chr14:16272498-16272836 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 17-321 |
| Cow position: | chr14:45710931-45711237 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 149 |
| Conread position: | 17-337 |
| Cow position: | chr14:44582157-44581815 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 35, 164 |
| Conread position: | 18-337 |
| Cow position: | chr14:12611226-12610912 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 56 |
| Conread position: | 19-268 |
| Cow position: | chr14:2285130-2284873 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 13, 149 |
| Conread position: | 19-268 |
| Cow position: | chr14:33392996-33393252 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 20, 148 |
| Conread position: | 19-323 |
| Cow position: | chr14:5529863-5529543 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 22-268 |
| Cow position: | chr14:13863302-13863562 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 22-337 |
| Cow position: | chr14:44676907-44676579 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 23, 245 |
| Conread position: | 28-323 |
| Cow position: | chr14:48253530-48253836 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 39-329 |
| Cow position: | chr14:33489173-33488877 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 42-312 |
| Cow position: | chr14:40341819-40341537 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 42-336 |
| Cow position: | chr14:38530695-38530995 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 53-336 |
| Cow position: | chr14:5074721-5074429 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 78, 164 |
| Conread position: | 55-322 |
| Cow position: | chr14:44131638-44131371 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 71, 222 |
| Conread position: | 58-323 |
| Cow position: | chr14:5512574-5512299 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 84-336 |
| Cow position: | chr14:29775490-29775754 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 257 |
| Conread position: | 88-336 |
| Cow position: | chr14:30735694-30735444 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 29, 51 |
| Conread position: | 92-326 |
| Cow position: | chr14:35385356-35385599 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 96-316 |
| Cow position: | chr14:34776932-34776695 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 99-325 |
| Cow position: | chr14:44286544-44286778 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 99-325 |
| Cow position: | chr14:44288448-44288682 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 117-326 |
| Cow position: | chr14:44227086-44226871 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 129-336 |
| Cow position: | chr14:44552556-44552349 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 146 |
Show alignments to all cow chromosomes.