Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-219 |
| Cow position: | chr15:36392331-36392553 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 120 |
| Conread position: | 1-237 |
| Cow position: | chr15:1042393-1042635 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-268 |
| Cow position: | chr15:6386533-6386805 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 1-268 |
| Cow position: | chr15:20750201-20749927 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 166 |
| Conread position: | 1-268 |
| Cow position: | chr15:32712035-32711762 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 38, 187 |
| Conread position: | 1-312 |
| Cow position: | chr15:6471117-6471442 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 1-312 |
| Cow position: | chr15:32719933-32720253 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 287 |
| Conread position: | 1-313 |
| Cow position: | chr15:2926119-2925799 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 1-316 |
| Cow position: | chr15:2646844-2647171 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr15:3009032-3009369 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr15:4197272-4196946 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 7 |
| Conread position: | 1-316 |
| Cow position: | chr15:11597197-11597523 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr15:22378715-22378388 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-317 |
| Cow position: | chr15:4679069-4678771 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 1-317 |
| Cow position: | chr15:36668560-36668229 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-320 |
| Cow position: | chr15:51715725-51715408 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 259, 47 |
| Conread position: | 1-323 |
| Cow position: | chr15:8811213-8811547 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 208 |
| Conread position: | 1-323 |
| Cow position: | chr15:18332017-18332352 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-323 |
| Cow position: | chr15:44070739-44070405 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-326 |
| Cow position: | chr15:9430749-9430421 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 1-330 |
| Cow position: | chr15:1773308-1772966 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 38, 7 |
| Conread position: | 1-331 |
| Cow position: | chr15:6591804-6592149 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-331 |
| Cow position: | chr15:18577523-18577179 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-331 |
| Cow position: | chr15:21664932-21665278 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-336 |
| Cow position: | chr15:4652174-4651823 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 294 |
| Conread position: | 1-336 |
| Cow position: | chr15:14581552-14581895 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 58 |
| Conread position: | 1-336 |
| Cow position: | chr15:35646866-35647202 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 1-336 |
| Cow position: | chr15:51675527-51675180 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 115 |
| Conread position: | 1-337 |
| Cow position: | chr15:5981160-5980810 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-337 |
| Cow position: | chr15:15346302-15346652 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 2-317 |
| Cow position: | chr15:8409683-8409356 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 41, 85 |
| Conread position: | 2-322 |
| Cow position: | chr15:2214086-2214416 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 2-334 |
| Cow position: | chr15:4962446-4962099 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 2-336 |
| Cow position: | chr15:8100278-8099936 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 108 |
| Conread position: | 5-312 |
| Cow position: | chr15:35736599-35736277 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 8-326 |
| Cow position: | chr15:4813404-4813074 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 36, 68 |
| Conread position: | 15-322 |
| Cow position: | chr15:9003329-9003642 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 15-325 |
| Cow position: | chr15:21450477-21450138 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 242 |
| Conread position: | 16-203 |
| Cow position: | chr15:4950857-4950666 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 113, 41 |
| Conread position: | 16-323 |
| Cow position: | chr15:2077454-2077135 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 16-323 |
| Cow position: | chr15:4386551-4386237 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 25 |
| Conread position: | 16-323 |
| Cow position: | chr15:19737259-19737572 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 57 |
| Conread position: | 16-325 |
| Cow position: | chr15:31359675-31359358 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 275 |
| Conread position: | 16-332 |
| Cow position: | chr15:7545660-7545332 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 17-268 |
| Cow position: | chr15:6485376-6485124 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 103, 141 |
| Conread position: | 17-331 |
| Cow position: | chr15:4672233-4671902 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 17-336 |
| Cow position: | chr15:2017362-2017034 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 116, 144 |
| Conread position: | 22-208 |
| Cow position: | chr15:4915981-4915793 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 22-322 |
| Cow position: | chr15:13391276-13391590 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 22-336 |
| Cow position: | chr15:9913488-9913156 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 27-320 |
| Cow position: | chr15:7965162-7965467 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 29-337 |
| Cow position: | chr15:6079536-6079216 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 33-336 |
| Cow position: | chr15:21948474-21948782 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 47-326 |
| Cow position: | chr15:33494393-33494106 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 81, 97 |
| Conread position: | 52-320 |
| Cow position: | chr15:4823237-4822959 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 162 |
| Conread position: | 53-323 |
| Cow position: | chr15:24295854-24295575 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 84-331 |
| Cow position: | chr15:1668441-1668195 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 127 |
| Conread position: | 84-337 |
| Cow position: | chr15:1658001-1658253 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 36, 127 |
| Conread position: | 93-323 |
| Cow position: | chr15:524142-524382 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 96-323 |
| Cow position: | chr15:53136506-53136743 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 114-336 |
| Cow position: | chr15:10889307-10889082 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 160-310 |
| Cow position: | chr15:53313408-53313257 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 175-326 |
| Cow position: | chr15:1300177-1300331 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 178-336 |
| Cow position: | chr15:6368331-6368493 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 155 |
Show alignments to all cow chromosomes.