Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-221 |
| Cow position: | chr17:22559008-22558785 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 56, 76 |
| Conread position: | 1-238 |
| Cow position: | chr17:2174847-2174607 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 1-269 |
| Cow position: | chr17:14215989-14216270 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 38, 140 |
| Conread position: | 1-305 |
| Cow position: | chr17:31533248-31532945 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 1-315 |
| Cow position: | chr17:20403470-20403136 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-315 |
| Cow position: | chr17:20488981-20488652 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 47, 124 |
| Conread position: | 1-316 |
| Cow position: | chr17:6120754-6120425 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 37, 168 |
| Conread position: | 1-316 |
| Cow position: | chr17:43989540-43989210 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-319 |
| Cow position: | chr17:1881140-1880808 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 47, 235 |
| Conread position: | 1-320 |
| Cow position: | chr17:13705585-13705252 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 48, 251 |
| Conread position: | 1-322 |
| Cow position: | chr17:1703658-1703985 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 128, 34 |
| Conread position: | 1-323 |
| Cow position: | chr17:14240538-14240204 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-323 |
| Cow position: | chr17:15324868-15324535 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-323 |
| Cow position: | chr17:15851727-15851398 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-323 |
| Cow position: | chr17:16856480-16856812 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 156 |
| Conread position: | 1-323 |
| Cow position: | chr17:19267788-19268123 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-326 |
| Cow position: | chr17:3655255-3655591 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 38, 257 |
| Conread position: | 1-331 |
| Cow position: | chr17:24028964-24029307 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-336 |
| Cow position: | chr17:20099429-20099783 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 84 |
| Conread position: | 1-337 |
| Cow position: | chr17:1786901-1787248 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 1-337 |
| Cow position: | chr17:2580663-2580313 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 42, 284 |
| Conread position: | 1-337 |
| Cow position: | chr17:4061136-4060790 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 296 |
| Conread position: | 1-337 |
| Cow position: | chr17:6260899-6260548 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-337 |
| Cow position: | chr17:20080834-20081175 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 2-323 |
| Cow position: | chr17:14040003-14040331 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 123 |
| Conread position: | 8-326 |
| Cow position: | chr17:4083046-4082730 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 59 |
| Conread position: | 16-323 |
| Cow position: | chr17:11086695-11087016 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 16-323 |
| Cow position: | chr17:40805834-40805515 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 17-235 |
| Cow position: | chr17:22133229-22132999 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 17-337 |
| Cow position: | chr17:54423-54763 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 19-336 |
| Cow position: | chr17:15436813-15436486 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 13, 273 |
| Conread position: | 22-297 |
| Cow position: | chr17:18194824-18194541 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 22-308 |
| Cow position: | chr17:16121525-16121805 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 22-326 |
| Cow position: | chr17:4941699-4942027 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 26, 196 |
| Conread position: | 27-269 |
| Cow position: | chr17:23323436-23323688 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 39-316 |
| Cow position: | chr17:11783839-11783556 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 90, 127 |
| Conread position: | 42-326 |
| Cow position: | chr17:1656851-1657149 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 166 |
| Conread position: | 42-337 |
| Cow position: | chr17:150900-151207 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 20 |
| Conread position: | 52-337 |
| Cow position: | chr17:20086767-20087059 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 51, 122 |
| Conread position: | 54-323 |
| Cow position: | chr17:3641849-3642126 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 248 |
| Conread position: | 74-323 |
| Cow position: | chr17:38874596-38874334 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 90-319 |
| Cow position: | chr17:42265909-42265675 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 36, 132 |
Show alignments to all cow chromosomes.