Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-214 |
| Cow position: | chr21:40683119-40683339 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-261 |
| Cow position: | chr21:27036074-27036341 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-268 |
| Cow position: | chr21:11506936-11506649 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-292 |
| Cow position: | chr21:45782808-45782505 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 1-297 |
| Cow position: | chr21:468181-467887 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 110 |
| Conread position: | 1-298 |
| Cow position: | chr21:2673679-2673984 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-312 |
| Cow position: | chr21:30398-30081 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 1-316 |
| Cow position: | chr21:37372563-37372237 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 1-316 |
| Cow position: | chr21:37936151-37935824 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr21:42914689-42914365 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 113, 47 |
| Conread position: | 1-322 |
| Cow position: | chr21:28256750-28256427 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 39, 108 |
| Conread position: | 1-322 |
| Cow position: | chr21:40270347-40270678 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr21:1193080-1192753 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 92 |
| Conread position: | 1-323 |
| Cow position: | chr21:3780095-3779761 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 121 |
| Conread position: | 1-323 |
| Cow position: | chr21:5839938-5840271 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-323 |
| Cow position: | chr21:33253507-33253169 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 215 |
| Conread position: | 1-326 |
| Cow position: | chr21:360986-360633 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-331 |
| Cow position: | chr21:35145084-35144741 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-337 |
| Cow position: | chr21:26402164-26402510 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 2-326 |
| Cow position: | chr21:18817222-18817564 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-316 |
| Cow position: | chr21:2712260-2711965 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 15-323 |
| Cow position: | chr21:147240-146922 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 32 |
| Conread position: | 16-244 |
| Cow position: | chr21:47942257-47942024 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 16-322 |
| Cow position: | chr21:27069651-27069973 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 301 |
| Conread position: | 16-323 |
| Cow position: | chr21:2882425-2882745 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 290 |
| Conread position: | 16-336 |
| Cow position: | chr21:5018426-5018094 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 324 |
| Conread position: | 17-316 |
| Cow position: | chr21:37046931-37046622 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 22, 150 |
| Conread position: | 18-336 |
| Cow position: | chr21:2417525-2417196 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 143 |
| Conread position: | 19-316 |
| Cow position: | chr21:12054700-12055004 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 147 |
| Conread position: | 22-268 |
| Cow position: | chr21:10851390-10851132 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 22-326 |
| Cow position: | chr21:4185208-4184894 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 22-337 |
| Cow position: | chr21:10567973-10567654 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 33-303 |
| Cow position: | chr21:48292747-48292462 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 42-310 |
| Cow position: | chr21:2539797-2540071 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 15, 114 |
| Conread position: | 56-336 |
| Cow position: | chr21:37718756-37719041 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 11, 79 |
| Conread position: | 79-326 |
| Cow position: | chr21:13314002-13313749 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 56, 160 |
| Conread position: | 91-336 |
| Cow position: | chr21:6625007-6624753 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 121-336 |
| Cow position: | chr21:1287013-1287237 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 8, 217 |
| Conread position: | 142-336 |
| Cow position: | chr21:4078013-4077812 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 144-305 |
| Cow position: | chr21:20743401-20743569 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 161-322 |
| Cow position: | chr21:21222808-21222974 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 58 |
Show alignments to all cow chromosomes.