Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-199 |
| Cow position: | chr22:46580565-46580772 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-268 |
| Cow position: | chr22:538258-537981 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 1-268 |
| Cow position: | chr22:3277205-3277479 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-268 |
| Cow position: | chr22:11803899-11804175 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 30, 167 |
| Conread position: | 1-291 |
| Cow position: | chr22:46613017-46612727 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 46, 116 |
| Conread position: | 1-293 |
| Cow position: | chr22:37292510-37292815 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-309 |
| Cow position: | chr22:36860385-36860697 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 127 |
| Conread position: | 1-316 |
| Cow position: | chr22:6021819-6021490 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 38, 168 |
| Conread position: | 1-316 |
| Cow position: | chr22:10908684-10909009 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 128, 31 |
| Conread position: | 1-316 |
| Cow position: | chr22:16202083-16201754 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 167 |
| Conread position: | 1-316 |
| Cow position: | chr22:27308622-27308948 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 38, 139 |
| Conread position: | 1-317 |
| Cow position: | chr22:12730533-12730857 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 136 |
| Conread position: | 1-320 |
| Cow position: | chr22:11032902-11032571 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr22:6332864-6332531 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 242 |
| Conread position: | 1-323 |
| Cow position: | chr22:34169493-34169159 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr22:39468364-39468700 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 313 |
| Conread position: | 1-323 |
| Cow position: | chr22:42992329-42992000 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 235 |
| Conread position: | 1-323 |
| Cow position: | chr22:44935124-44934793 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-326 |
| Cow position: | chr22:37141054-37140718 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 177 |
| Conread position: | 1-327 |
| Cow position: | chr22:694776-694438 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 165 |
| Conread position: | 1-331 |
| Cow position: | chr22:37133808-37133466 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 1-335 |
| Cow position: | chr22:36184914-36184567 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 45, 75 |
| Conread position: | 1-336 |
| Cow position: | chr22:44350508-44350854 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 1-337 |
| Cow position: | chr22:1323361-1323018 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 194 |
| Conread position: | 2-133 |
| Cow position: | chr22:8120926-8121060 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 2-331 |
| Cow position: | chr22:1519867-1520208 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 311 |
| Conread position: | 2-337 |
| Cow position: | chr22:44477775-44477416 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 128 |
| Conread position: | 3-322 |
| Cow position: | chr22:559555-559889 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 3-323 |
| Cow position: | chr22:15312798-15313131 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 6-304 |
| Cow position: | chr22:6501986-6502305 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 37, 236 |
| Conread position: | 16-316 |
| Cow position: | chr22:3803326-3803016 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 199 |
| Conread position: | 16-323 |
| Cow position: | chr22:17327317-17327635 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 198 |
| Conread position: | 16-323 |
| Cow position: | chr22:21590477-21590158 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 16-336 |
| Cow position: | chr22:1281587-1281922 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 205 |
| Conread position: | 17-323 |
| Cow position: | chr22:19142551-19142869 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 31, 160 |
| Conread position: | 18-268 |
| Cow position: | chr22:37268293-37268041 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 18-302 |
| Cow position: | chr22:5937019-5937312 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 22-324 |
| Cow position: | chr22:41418190-41418495 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 101 |
| Conread position: | 28-336 |
| Cow position: | chr22:8737202-8737523 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 42-317 |
| Cow position: | chr22:36276742-36276447 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 45-337 |
| Cow position: | chr22:31314454-31314152 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 53-320 |
| Cow position: | chr22:37071981-37072261 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 136-311 |
| Cow position: | chr22:24536740-24536559 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 116, 16 |
| Conread position: | 144-322 |
| Cow position: | chr22:6142380-6142561 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 11, 89 |
Show alignments to all cow chromosomes.