Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-232 |
| Cow position: | chr24:6085301-6085063 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-268 |
| Cow position: | chr24:6023867-6024141 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-268 |
| Cow position: | chr24:12150073-12150347 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 41, 108 |
| Conread position: | 1-306 |
| Cow position: | chr24:6142325-6142018 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 1-313 |
| Cow position: | chr24:6130065-6129751 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 116 |
| Conread position: | 1-316 |
| Cow position: | chr24:5991987-5992314 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr24:6327792-6328118 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 30, 165 |
| Conread position: | 1-316 |
| Cow position: | chr24:6435721-6435392 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 1-316 |
| Cow position: | chr24:23504624-23504951 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr24:29305075-29305407 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 1-323 |
| Cow position: | chr24:147371-147703 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 172 |
| Conread position: | 1-323 |
| Cow position: | chr24:12087447-12087113 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 301 |
| Conread position: | 1-323 |
| Cow position: | chr24:19834635-19834298 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-325 |
| Cow position: | chr24:17695741-17696078 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-334 |
| Cow position: | chr24:12238530-12238191 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 1-336 |
| Cow position: | chr24:6659258-6659597 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 38, 93 |
| Conread position: | 1-337 |
| Cow position: | chr24:12128824-12129176 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 59 |
| Conread position: | 1-337 |
| Cow position: | chr24:22972331-22971982 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 2-298 |
| Cow position: | chr24:31006197-31006495 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 8, 136 |
| Conread position: | 2-324 |
| Cow position: | chr24:36558528-36558867 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 2-336 |
| Cow position: | chr24:6337626-6337280 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 46, 120 |
| Conread position: | 13-209 |
| Cow position: | chr24:35869328-35869530 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 43, 91 |
| Conread position: | 15-327 |
| Cow position: | chr24:14871092-14871411 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 117, 54 |
| Conread position: | 16-323 |
| Cow position: | chr24:6407261-6406936 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 16-326 |
| Cow position: | chr24:38638759-38638442 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 17-316 |
| Cow position: | chr24:9187514-9187820 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 112, 15 |
| Conread position: | 19-268 |
| Cow position: | chr24:13044410-13044665 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 13, 147 |
| Conread position: | 20-337 |
| Cow position: | chr24:6332470-6332803 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 22-323 |
| Cow position: | chr24:4414312-4414625 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 223 |
| Conread position: | 22-323 |
| Cow position: | chr24:9545282-9544971 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 220 |
| Conread position: | 22-334 |
| Cow position: | chr24:12205086-12205411 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 320 |
| Conread position: | 27-294 |
| Cow position: | chr24:36709581-36709300 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 87, 25 |
| Conread position: | 106-337 |
| Cow position: | chr24:11866115-11866357 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 109-319 |
| Cow position: | chr24:12163040-12162821 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 111-337 |
| Cow position: | chr24:14389413-14389650 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 129-322 |
| Cow position: | chr24:27147818-27147618 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 161 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 26, 121 |
| Conread position: | 138-337 |
| Cow position: | chr24:29183250-29183042 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 174-326 |
| Cow position: | chr24:40193573-40193416 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 96, 0 |
Show alignments to all cow chromosomes.