Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-297 |
| Cow position: | chr29:2747274-2747573 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 1-310 |
| Cow position: | chr29:14449061-14448754 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 1-310 |
| Cow position: | chr29:32891956-32891641 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 162 |
| Conread position: | 1-316 |
| Cow position: | chr29:7845553-7845221 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 166 |
| Conread position: | 1-316 |
| Cow position: | chr29:18855784-18856109 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr29:31096216-31096542 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr29:35814809-35815136 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-317 |
| Cow position: | chr29:14084963-14085290 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 47 |
| Conread position: | 1-323 |
| Cow position: | chr29:7430052-7430386 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-323 |
| Cow position: | chr29:14210403-14210736 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr29:19622116-19622451 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-323 |
| Cow position: | chr29:23977289-23976956 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 1-323 |
| Cow position: | chr29:32541261-32540927 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 297 |
| Conread position: | 1-323 |
| Cow position: | chr29:40501818-40502145 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 1-323 |
| Cow position: | chr29:43323724-43323392 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1-326 |
| Cow position: | chr29:16111552-16111207 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 1-331 |
| Cow position: | chr29:10822816-10823150 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 39, 244 |
| Conread position: | 1-331 |
| Cow position: | chr29:25931364-25931717 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 249 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-336 |
| Cow position: | chr29:6265101-6265454 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 345 |
| Conread position: | 1-337 |
| Cow position: | chr29:5958756-5958420 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 81 |
| Conread position: | 1-337 |
| Cow position: | chr29:5981543-5981896 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-337 |
| Cow position: | chr29:20252333-20251982 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 2-323 |
| Cow position: | chr29:38228144-38227811 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 2-325 |
| Cow position: | chr29:2101016-2100679 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 271 |
| Conread position: | 4-336 |
| Cow position: | chr29:646954-646617 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 11 |
| Conread position: | 8-323 |
| Cow position: | chr29:19654787-19654464 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 10-185 |
| Cow position: | chr29:34754377-34754200 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 16-323 |
| Cow position: | chr29:14587072-14586753 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 296 |
| Conread position: | 16-323 |
| Cow position: | chr29:26163682-26163994 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 57 |
| Conread position: | 16-323 |
| Cow position: | chr29:39078553-39078873 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 16-323 |
| Cow position: | chr29:45205651-45205335 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 143 |
| Conread position: | 17-290 |
| Cow position: | chr29:27262748-27263029 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 213 |
| Conread position: | 17-302 |
| Cow position: | chr29:8774165-8774455 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 17-336 |
| Cow position: | chr29:609477-609803 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 119, 148 |
| Conread position: | 22-268 |
| Cow position: | chr29:43408484-43408728 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 20 |
| Conread position: | 22-269 |
| Cow position: | chr29:13651201-13650948 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 22-310 |
| Cow position: | chr29:801255-801547 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 22-312 |
| Cow position: | chr29:13920470-13920770 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 107, 18 |
| Conread position: | 22-313 |
| Cow position: | chr29:21265076-21264783 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 22-337 |
| Cow position: | chr29:2949223-2949528 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 107, 23 |
| Conread position: | 36-337 |
| Cow position: | chr29:21425894-21426207 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 193 |
| Conread position: | 48-336 |
| Cow position: | chr29:9642640-9642941 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 47 |
| Conread position: | 128-323 |
| Cow position: | chr29:2690947-2690744 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 15, 48 |
Show alignments to all cow chromosomes.