Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-259 |
| Cow position: | chr3:46017123-46016864 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 1-266 |
| Cow position: | chr3:66889890-66890154 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 32, 116 |
| Conread position: | 1-268 |
| Cow position: | chr3:7170280-7170007 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 1-268 |
| Cow position: | chr3:34506266-34506540 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-268 |
| Cow position: | chr3:36863381-36863655 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-268 |
| Cow position: | chr3:48843331-48843058 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-308 |
| Cow position: | chr3:48229395-48229716 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 215 |
| Conread position: | 1-309 |
| Cow position: | chr3:11198469-11198793 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 85 |
| Conread position: | 1-310 |
| Cow position: | chr3:64356721-64357034 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 46 |
| Conread position: | 1-313 |
| Cow position: | chr3:63002462-63002786 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-316 |
| Cow position: | chr3:2918544-2918217 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr3:4287166-4286839 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr3:18860494-18860167 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr3:27919504-27919177 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr3:37970123-37969796 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr3:63915034-63915361 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-320 |
| Cow position: | chr3:12678760-12679092 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 1-320 |
| Cow position: | chr3:40824470-40824142 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-323 |
| Cow position: | chr3:21181617-21181953 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-323 |
| Cow position: | chr3:24347039-24346716 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 14 |
| Conread position: | 1-323 |
| Cow position: | chr3:24444996-24445331 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-323 |
| Cow position: | chr3:38494319-38493984 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 234 |
| Conread position: | 1-323 |
| Cow position: | chr3:66621260-66620931 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 1-323 |
| Cow position: | chr3:75040080-75040413 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-326 |
| Cow position: | chr3:50916420-50916082 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 57, 163 |
| Conread position: | 1-326 |
| Cow position: | chr3:68698887-68699219 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 38, 154 |
| Conread position: | 1-331 |
| Cow position: | chr3:30315638-30315302 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 47, 162 |
| Conread position: | 1-331 |
| Cow position: | chr3:57483650-57483987 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 202 |
| Conread position: | 1-336 |
| Cow position: | chr3:2906694-2907035 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 99 |
| Conread position: | 1-336 |
| Cow position: | chr3:3840723-3841075 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 345 |
| Conread position: | 1-336 |
| Cow position: | chr3:19939970-19939628 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 38, 159 |
| Conread position: | 1-336 |
| Cow position: | chr3:46503635-46503282 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 72 |
| Conread position: | 1-336 |
| Cow position: | chr3:49544128-49544474 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 193 |
| Conread position: | 1-337 |
| Cow position: | chr3:2709790-2710136 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 114 |
| Conread position: | 1-337 |
| Cow position: | chr3:6686888-6686543 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-337 |
| Cow position: | chr3:10240740-10240389 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 1-337 |
| Cow position: | chr3:50126530-50126900 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 346 |
| Conread position: | 1-337 |
| Cow position: | chr3:53516681-53516344 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 45 |
| Conread position: | 2-305 |
| Cow position: | chr3:37989975-37989651 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 252 |
| Conread position: | 2-316 |
| Cow position: | chr3:7157644-7157970 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 37, 165 |
| Conread position: | 2-320 |
| Cow position: | chr3:3057882-3057581 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 2-322 |
| Cow position: | chr3:78026347-78026671 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 24 |
| Conread position: | 2-327 |
| Cow position: | chr3:29579705-29579369 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 113 |
| Conread position: | 16-249 |
| Cow position: | chr3:56146378-56146148 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 32, 138 |
| Conread position: | 16-269 |
| Cow position: | chr3:70888208-70887944 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 252 |
| Conread position: | 16-312 |
| Cow position: | chr3:18812566-18812267 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 30, 170 |
| Conread position: | 16-312 |
| Cow position: | chr3:19800110-19800418 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 16-336 |
| Cow position: | chr3:56339350-56339683 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 326 |
| Conread position: | 17-268 |
| Cow position: | chr3:2368270-2368523 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 113, 15 |
| Conread position: | 17-303 |
| Cow position: | chr3:15181425-15181133 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 32, 64 |
| Conread position: | 17-311 |
| Cow position: | chr3:40343187-40342879 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 19-268 |
| Cow position: | chr3:45033813-45033555 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 19-320 |
| Cow position: | chr3:64027065-64027375 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 237 |
| Conread position: | 22-269 |
| Cow position: | chr3:42052099-42052351 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 22-318 |
| Cow position: | chr3:19945302-19944982 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 68 |
| Conread position: | 22-337 |
| Cow position: | chr3:6877107-6877438 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 175 |
| Conread position: | 25-268 |
| Cow position: | chr3:20381599-20381350 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 39-326 |
| Cow position: | chr3:68872709-68873009 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 92, 130 |
| Conread position: | 41-316 |
| Cow position: | chr3:19879693-19879409 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 88, 249 |
| Conread position: | 42-322 |
| Cow position: | chr3:58948662-58948364 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 46-304 |
| Cow position: | chr3:4029206-4028939 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 52-336 |
| Cow position: | chr3:77424658-77424370 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 108, 51 |
| Conread position: | 53-337 |
| Cow position: | chr3:72631101-72630808 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 54-291 |
| Cow position: | chr3:49136535-49136781 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 79-326 |
| Cow position: | chr3:24588777-24589022 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 79-326 |
| Cow position: | chr3:42143859-42144118 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 35, 80 |
| Conread position: | 92-268 |
| Cow position: | chr3:36877695-36877877 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 121-326 |
| Cow position: | chr3:49678756-49678546 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 147-323 |
| Cow position: | chr3:7480299-7480481 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 160-336 |
| Cow position: | chr3:18462653-18462834 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 10, 174 |
Show alignments to all cow chromosomes.