Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-268 |
| Cow position: | chr4:530290-530013 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-268 |
| Cow position: | chr4:603900-603629 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 1-268 |
| Cow position: | chr4:1929755-1930017 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 38, 222 |
| Conread position: | 1-268 |
| Cow position: | chr4:5443946-5444222 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-268 |
| Cow position: | chr4:18423637-18423910 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 204 |
| Conread position: | 1-268 |
| Cow position: | chr4:45106346-45106072 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-269 |
| Cow position: | chr4:3126690-3126405 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 172 |
| Conread position: | 1-313 |
| Cow position: | chr4:60263274-60263601 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 190 |
| Conread position: | 1-316 |
| Cow position: | chr4:4416945-4416632 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 112 |
| Conread position: | 1-316 |
| Cow position: | chr4:16057566-16057240 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 40, 205 |
| Conread position: | 1-316 |
| Cow position: | chr4:17092979-17093305 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-319 |
| Cow position: | chr4:51042408-51042732 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 1-322 |
| Cow position: | chr4:25598611-25598940 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 175 |
| Conread position: | 1-323 |
| Cow position: | chr4:16639498-16639165 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr4:36897262-36896927 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr4:43318754-43319088 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-325 |
| Cow position: | chr4:12588217-12587885 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 174 |
| Conread position: | 1-326 |
| Cow position: | chr4:11110393-11110713 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 1-336 |
| Cow position: | chr4:46665412-46665060 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 345 |
| Conread position: | 1-336 |
| Cow position: | chr4:49716564-49716216 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 1-337 |
| Cow position: | chr4:27300598-27300941 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 120 |
| Conread position: | 2-316 |
| Cow position: | chr4:5881041-5880723 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 37, 166 |
| Conread position: | 2-322 |
| Cow position: | chr4:12240332-12240655 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 245 |
| Conread position: | 2-322 |
| Cow position: | chr4:44726473-44726152 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 7, 47 |
| Conread position: | 5-336 |
| Cow position: | chr4:28832450-28832102 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 16-268 |
| Cow position: | chr4:27334586-27334327 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 16-316 |
| Cow position: | chr4:160033-159719 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 16-323 |
| Cow position: | chr4:17925092-17925407 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 16-323 |
| Cow position: | chr4:43881978-43881660 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 16-336 |
| Cow position: | chr4:10093772-10093449 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 31, 77 |
| Conread position: | 17-337 |
| Cow position: | chr4:6206476-6206135 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 27-323 |
| Cow position: | chr4:10882410-10882101 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 28-269 |
| Cow position: | chr4:27294458-27294706 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 28-330 |
| Cow position: | chr4:19252306-19251999 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 42-268 |
| Cow position: | chr4:32213019-32212784 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 52-336 |
| Cow position: | chr4:39270567-39270861 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 56-322 |
| Cow position: | chr4:18517729-18517454 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 66-337 |
| Cow position: | chr4:19005728-19006017 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 94-326 |
| Cow position: | chr4:34183746-34183989 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 7, 51 |
| Conread position: | 95-272 |
| Cow position: | chr4:69521348-69521174 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 116-336 |
| Cow position: | chr4:48027169-48026945 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 216 |
Show alignments to all cow chromosomes.