Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-209 |
| Cow position: | chr5:27654795-27654584 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 1-227 |
| Cow position: | chr5:39017020-39016787 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-268 |
| Cow position: | chr5:42505988-42505713 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-268 |
| Cow position: | chr5:47830094-47830362 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 1-268 |
| Cow position: | chr5:58196998-58196725 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 7 |
| Conread position: | 1-287 |
| Cow position: | chr5:31100438-31100738 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 49, 162 |
| Conread position: | 1-309 |
| Cow position: | chr5:46668927-46668614 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 57 |
| Conread position: | 1-310 |
| Cow position: | chr5:41466059-41465736 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 1-316 |
| Cow position: | chr5:38074015-38073688 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr5:45181161-45181488 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr5:46808295-46807968 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-320 |
| Cow position: | chr5:10775285-10775616 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 38, 264 |
| Conread position: | 1-320 |
| Cow position: | chr5:57481555-57481886 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-320 |
| Cow position: | chr5:64781032-64781363 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-322 |
| Cow position: | chr5:49519544-49519211 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr5:2915432-2915099 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 10 |
| Conread position: | 1-323 |
| Cow position: | chr5:4070192-4069870 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 158 |
| Conread position: | 1-323 |
| Cow position: | chr5:10919804-10919476 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 72 |
| Conread position: | 1-323 |
| Cow position: | chr5:30580323-30579979 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-323 |
| Cow position: | chr5:48807755-48808089 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr5:55628975-55628641 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr5:59283300-59282969 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 227 |
| Conread position: | 1-323 |
| Cow position: | chr5:73488576-73488907 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 1-325 |
| Cow position: | chr5:46737593-46737926 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 1-326 |
| Cow position: | chr5:13046439-13046098 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-326 |
| Cow position: | chr5:28242033-28241699 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-326 |
| Cow position: | chr5:32773749-32773421 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 1-331 |
| Cow position: | chr5:18114908-18115234 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 1-335 |
| Cow position: | chr5:27002986-27002647 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 125 |
| Conread position: | 1-336 |
| Cow position: | chr5:32948046-32947694 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 345 |
| Conread position: | 1-336 |
| Cow position: | chr5:46004872-46005215 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 40, 336 |
| Conread position: | 1-337 |
| Cow position: | chr5:41960753-41961089 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 41 |
| Conread position: | 1-337 |
| Cow position: | chr5:45701298-45700949 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 259 |
| Conread position: | 2-323 |
| Cow position: | chr5:37733329-37732997 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 46, 201 |
| Conread position: | 8-308 |
| Cow position: | chr5:9419090-9419406 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 104, 24 |
| Conread position: | 8-323 |
| Cow position: | chr5:1341056-1341382 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 192 |
| Conread position: | 10-336 |
| Cow position: | chr5:41527818-41528138 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 15-313 |
| Cow position: | chr5:6588044-6588363 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 16-196 |
| Cow position: | chr5:23686922-23687109 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 16-223 |
| Cow position: | chr5:51308891-51309100 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 139 |
| Conread position: | 16-312 |
| Cow position: | chr5:4386212-4385903 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 32, 177 |
| Conread position: | 16-316 |
| Cow position: | chr5:4018226-4018544 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 16-316 |
| Cow position: | chr5:44460451-44460139 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 23, 151 |
| Conread position: | 16-322 |
| Cow position: | chr5:40789034-40788711 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 16-323 |
| Cow position: | chr5:3503137-3503468 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 16-323 |
| Cow position: | chr5:34697573-34697253 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 16-336 |
| Cow position: | chr5:46629210-46629549 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 17-312 |
| Cow position: | chr5:18664757-18664452 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 112, 15 |
| Conread position: | 17-316 |
| Cow position: | chr5:23959355-23959659 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 112, 15 |
| Conread position: | 18-337 |
| Cow position: | chr5:41554368-41554696 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 141 |
| Conread position: | 19-268 |
| Cow position: | chr5:4757200-4757454 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 20-336 |
| Cow position: | chr5:39245848-39246174 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 22-322 |
| Cow position: | chr5:28949917-28950214 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 60 |
| Conread position: | 22-337 |
| Cow position: | chr5:52434507-52434189 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 69, 178 |
| Conread position: | 24-268 |
| Cow position: | chr5:34903152-34902908 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 200 |
| Conread position: | 29-311 |
| Cow position: | chr5:54861121-54861399 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 29-313 |
| Cow position: | chr5:14784402-14784707 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 86, 169 |
| Conread position: | 44-336 |
| Cow position: | chr5:27055738-27056042 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 8 |
| Conread position: | 48-336 |
| Cow position: | chr5:18273677-18273381 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 80-336 |
| Cow position: | chr5:28012559-28012292 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 10, 261 |
| Conread position: | 82-323 |
| Cow position: | chr5:29766796-29766534 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 89-326 |
| Cow position: | chr5:32308500-32308747 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 92-326 |
| Cow position: | chr5:49130435-49130202 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 132-322 |
| Cow position: | chr5:49591251-49591448 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 160-324 |
| Cow position: | chr5:26067078-26067244 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 185-323 |
| Cow position: | chr5:7274621-7274481 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
Show alignments to all cow chromosomes.