Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-227 |
| Cow position: | chr6:50482-50717 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-233 |
| Cow position: | chr6:28276133-28275893 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-261 |
| Cow position: | chr6:55542140-55542408 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-268 |
| Cow position: | chr6:3150387-3150114 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 38, 145 |
| Conread position: | 1-268 |
| Cow position: | chr6:11871522-11871795 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 38, 204 |
| Conread position: | 1-284 |
| Cow position: | chr6:36527425-36527130 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-300 |
| Cow position: | chr6:50635078-50634759 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 289 |
| Conread position: | 1-316 |
| Cow position: | chr6:10339492-10339799 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 127 |
| Conread position: | 1-316 |
| Cow position: | chr6:13105184-13104855 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 226 |
| Conread position: | 1-316 |
| Cow position: | chr6:13848150-13847823 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr6:13945033-13944705 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr6:40276210-40275885 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 1-316 |
| Cow position: | chr6:43618845-43618513 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1-316 |
| Cow position: | chr6:44000185-43999859 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr6:50646060-50646387 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr6:65820849-65821176 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 1-317 |
| Cow position: | chr6:18973293-18973612 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 41 |
| Conread position: | 1-323 |
| Cow position: | chr6:8760171-8760500 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 1-323 |
| Cow position: | chr6:15140053-15140391 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr6:15278690-15279021 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 1-323 |
| Cow position: | chr6:27471703-27471392 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 1-323 |
| Cow position: | chr6:35875588-35875926 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr6:39333745-39334079 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr6:40866200-40866527 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 44, 218 |
| Conread position: | 1-323 |
| Cow position: | chr6:51087065-51086733 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 1-325 |
| Cow position: | chr6:3276248-3276586 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-325 |
| Cow position: | chr6:39438889-39438553 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-326 |
| Cow position: | chr6:58601607-58601267 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-327 |
| Cow position: | chr6:13310233-13310574 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-336 |
| Cow position: | chr6:28104736-28105082 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 1-336 |
| Cow position: | chr6:28170025-28169682 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 58 |
| Conread position: | 1-336 |
| Cow position: | chr6:44149433-44149778 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 38, 338 |
| Conread position: | 1-336 |
| Cow position: | chr6:66232932-66232592 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 113, 47 |
| Conread position: | 2-326 |
| Cow position: | chr6:58065860-58065518 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 2-336 |
| Cow position: | chr6:65882334-65881990 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 3-323 |
| Cow position: | chr6:914755-914421 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 220 |
| Conread position: | 15-323 |
| Cow position: | chr6:1099054-1099367 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 111, 47 |
| Conread position: | 15-325 |
| Cow position: | chr6:65940718-65941034 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 15-330 |
| Cow position: | chr6:16635357-16635038 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 156 |
| Conread position: | 16-268 |
| Cow position: | chr6:21836080-21836343 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 16-310 |
| Cow position: | chr6:15478282-15477966 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 34, 241 |
| Conread position: | 16-320 |
| Cow position: | chr6:703326-703010 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 16-323 |
| Cow position: | chr6:8203294-8202973 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 16-337 |
| Cow position: | chr6:58027783-58027451 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 107 |
| Conread position: | 17-323 |
| Cow position: | chr6:3487324-3487633 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 17-323 |
| Cow position: | chr6:24240161-24239848 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 31, 204 |
| Conread position: | 17-325 |
| Cow position: | chr6:14761805-14762099 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 113, 35 |
| Conread position: | 18-334 |
| Cow position: | chr6:66193416-66193743 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 107 |
| Conread position: | 19-294 |
| Cow position: | chr6:3888394-3888676 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 12, 218 |
| Conread position: | 19-316 |
| Cow position: | chr6:68028032-68027719 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 147 |
| Conread position: | 22-310 |
| Cow position: | chr6:44550060-44550352 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 26, 172 |
| Conread position: | 22-313 |
| Cow position: | chr6:10644839-10644542 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 26 |
| Conread position: | 22-316 |
| Cow position: | chr6:46573504-46573810 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 17, 145 |
| Conread position: | 24-316 |
| Cow position: | chr6:52694114-52693814 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 105, 35 |
| Conread position: | 42-323 |
| Cow position: | chr6:65842708-65842415 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 42-336 |
| Cow position: | chr6:13316378-13316695 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 87, 306 |
| Conread position: | 43-337 |
| Cow position: | chr6:38271969-38271665 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 52-323 |
| Cow position: | chr6:25215287-25215012 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 69 |
| Conread position: | 52-323 |
| Cow position: | chr6:47042130-47042411 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 62-326 |
| Cow position: | chr6:59918008-59918288 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 62-336 |
| Cow position: | chr6:6474801-6475089 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 281 |
| Conread position: | 79-320 |
| Cow position: | chr6:69143660-69143424 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 88-326 |
| Cow position: | chr6:30480137-30479889 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 96-316 |
| Cow position: | chr6:28133959-28133727 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 152-323 |
| Cow position: | chr6:25793846-25794023 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 153-310 |
| Cow position: | chr6:6157507-6157348 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 17, 66 |
Show alignments to all cow chromosomes.