Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-133 |
| Cow position: | chr7:27606096-27606230 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-212 |
| Cow position: | chr7:40320125-40319902 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-249 |
| Cow position: | chr7:6630086-6630341 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 38, 157 |
| Conread position: | 1-251 |
| Cow position: | chr7:5261709-5261967 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-285 |
| Cow position: | chr7:66228099-66227819 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 1-294 |
| Cow position: | chr7:66905937-66905633 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-309 |
| Cow position: | chr7:33332774-33332455 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 1-314 |
| Cow position: | chr7:52763496-52763166 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 169 |
| Conread position: | 1-316 |
| Cow position: | chr7:6721361-6721032 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 38, 168 |
| Conread position: | 1-316 |
| Cow position: | chr7:11462834-11463158 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 1-316 |
| Cow position: | chr7:20774119-20774444 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr7:20798227-20798554 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-316 |
| Cow position: | chr7:48805518-48805849 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 170 |
| Conread position: | 1-319 |
| Cow position: | chr7:3156682-3156354 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 123 |
| Conread position: | 1-319 |
| Cow position: | chr7:21930352-21930034 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 39, 247 |
| Conread position: | 1-320 |
| Cow position: | chr7:546059-545727 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 128, 166 |
| Conread position: | 1-322 |
| Cow position: | chr7:14138380-14138714 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-323 |
| Cow position: | chr7:1371429-1371765 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-323 |
| Cow position: | chr7:5308899-5309232 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 310 |
| Conread position: | 1-323 |
| Cow position: | chr7:10430208-10430542 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr7:34487129-34486797 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 1-323 |
| Cow position: | chr7:39792984-39792651 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-323 |
| Cow position: | chr7:55536711-55537040 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 160 |
| Conread position: | 1-325 |
| Cow position: | chr7:8144020-8144355 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 1-326 |
| Cow position: | chr7:15658-15996 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-326 |
| Cow position: | chr7:11447779-11447437 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-326 |
| Cow position: | chr7:14214151-14214489 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-326 |
| Cow position: | chr7:19990232-19989905 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 41 |
| Conread position: | 1-326 |
| Cow position: | chr7:58994800-58994472 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 1-326 |
| Cow position: | chr7:67676312-67675976 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 314 |
| Conread position: | 1-327 |
| Cow position: | chr7:67800038-67799702 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 158 |
| Conread position: | 1-331 |
| Cow position: | chr7:38398031-38397687 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-336 |
| Cow position: | chr7:20784759-20785106 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 218 |
| Conread position: | 1-336 |
| Cow position: | chr7:27787845-27787504 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 289 |
| Conread position: | 1-336 |
| Cow position: | chr7:51015477-51015132 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 76 |
| Conread position: | 1-336 |
| Cow position: | chr7:54643278-54643621 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 2-268 |
| Cow position: | chr7:25440716-25440444 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 47, 158 |
| Conread position: | 2-323 |
| Cow position: | chr7:1609422-1609764 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 3-336 |
| Cow position: | chr7:29471669-29471328 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 3-336 |
| Cow position: | chr7:63386947-63386596 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 344 |
| Conread position: | 10-267 |
| Cow position: | chr7:49829414-49829684 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 10-312 |
| Cow position: | chr7:1452852-1452535 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 98 |
| Conread position: | 16-268 |
| Cow position: | chr7:33311750-33312009 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 22, 143 |
| Conread position: | 16-312 |
| Cow position: | chr7:20514579-20514884 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 43 |
| Conread position: | 16-320 |
| Cow position: | chr7:29368820-29369136 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 110 |
| Conread position: | 16-323 |
| Cow position: | chr7:21986626-21986310 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 16-323 |
| Cow position: | chr7:34150506-34150188 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 17-322 |
| Cow position: | chr7:13532701-13533018 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 17-322 |
| Cow position: | chr7:42871342-42871023 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 17-336 |
| Cow position: | chr7:24058648-24058310 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 32, 61 |
| Conread position: | 17-337 |
| Cow position: | chr7:46900883-46901207 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 225 |
| Conread position: | 18-312 |
| Cow position: | chr7:36841348-36841645 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 18-313 |
| Cow position: | chr7:64239805-64240112 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 294 |
| Conread position: | 22-301 |
| Cow position: | chr7:53364547-53364835 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 22-311 |
| Cow position: | chr7:63556137-63555851 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 10, 194 |
| Conread position: | 23-305 |
| Cow position: | chr7:19269235-19269533 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 23-326 |
| Cow position: | chr7:27348490-27348798 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 118, 14 |
| Conread position: | 23-336 |
| Cow position: | chr7:67429764-67429438 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 27-336 |
| Cow position: | chr7:526164-525845 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 33-337 |
| Cow position: | chr7:995701-995382 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 78-323 |
| Cow position: | chr7:33405107-33405359 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 51, 5 |
| Conread position: | 91-325 |
| Cow position: | chr7:445228-445461 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 194 |
Show alignments to all cow chromosomes.