Cow genome map
| Conread name: | Ovi1-UMC-pd3ov3-006-e05 |
| Conread position: | 1-175 |
| Cow position: | chr8:53427896-53427719 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 128, 120 |
| Conread position: | 1-232 |
| Cow position: | chr8:54017148-54017382 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 158 |
| Conread position: | 1-268 |
| Cow position: | chr8:2887151-2886876 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 1-268 |
| Cow position: | chr8:14631268-14631540 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 38, 230 |
| Conread position: | 1-268 |
| Cow position: | chr8:25377384-25377111 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 38, 210 |
| Conread position: | 1-268 |
| Cow position: | chr8:37932493-37932219 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-268 |
| Cow position: | chr8:44662301-44662567 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 47, 142 |
| Conread position: | 1-269 |
| Cow position: | chr8:42656585-42656842 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 80, 47 |
| Conread position: | 1-312 |
| Cow position: | chr8:49859363-49859682 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 211 |
| Conread position: | 1-313 |
| Cow position: | chr8:28877698-28878025 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 1-316 |
| Cow position: | chr8:8555746-8556073 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr8:9736644-9736314 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-316 |
| Cow position: | chr8:22570907-22571234 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 1-322 |
| Cow position: | chr8:3855624-3855945 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 271 |
| Conread position: | 1-323 |
| Cow position: | chr8:4687805-4687471 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr8:5017582-5017248 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr8:10742266-10742601 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-323 |
| Cow position: | chr8:12450426-12450087 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-323 |
| Cow position: | chr8:24914934-24915267 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 1-323 |
| Cow position: | chr8:25775270-25775606 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 44, 136 |
| Conread position: | 1-323 |
| Cow position: | chr8:29008039-29007711 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 147 |
| Conread position: | 1-323 |
| Cow position: | chr8:32318150-32318483 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 1-323 |
| Cow position: | chr8:33589780-33589444 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-323 |
| Cow position: | chr8:38392043-38391726 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 47, 232 |
| Conread position: | 1-323 |
| Cow position: | chr8:50995172-50994842 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 1-326 |
| Cow position: | chr8:8315056-8315395 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-331 |
| Cow position: | chr8:8400712-8401055 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 47, 239 |
| Conread position: | 1-331 |
| Cow position: | chr8:19331115-19330772 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-336 |
| Cow position: | chr8:17312431-17312080 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 345 |
| Conread position: | 1-337 |
| Cow position: | chr8:32436683-32437027 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 1-337 |
| Cow position: | chr8:51666415-51666769 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 80 |
| Conread position: | 2-308 |
| Cow position: | chr8:45450173-45449872 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 54, 76 |
| Conread position: | 2-317 |
| Cow position: | chr8:58185188-58185503 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 46 |
| Conread position: | 2-323 |
| Cow position: | chr8:25409130-25408799 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 2-323 |
| Cow position: | chr8:39194816-39195146 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 56 |
| Conread position: | 2-326 |
| Cow position: | chr8:38605810-38606137 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 2-336 |
| Cow position: | chr8:41644271-41644614 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 336 |
| Conread position: | 4-337 |
| Cow position: | chr8:42158588-42158933 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 7-335 |
| Cow position: | chr8:45450700-45450360 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 10-336 |
| Cow position: | chr8:42579190-42579522 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 85 |
| Conread position: | 11-337 |
| Cow position: | chr8:11803217-11802877 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 14-336 |
| Cow position: | chr8:42469057-42468720 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 18, 173 |
| Conread position: | 16-226 |
| Cow position: | chr8:21230467-21230260 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 136, 113 |
| Conread position: | 16-323 |
| Cow position: | chr8:25523789-25523474 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 189 |
| Conread position: | 16-323 |
| Cow position: | chr8:42485303-42484985 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 16-337 |
| Cow position: | chr8:50929729-50930076 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 17-313 |
| Cow position: | chr8:19865629-19865333 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 138, 61 |
| Conread position: | 17-316 |
| Cow position: | chr8:2447606-2447301 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 112, 15 |
| Conread position: | 17-326 |
| Cow position: | chr8:42419041-42419374 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 18-316 |
| Cow position: | chr8:30890930-30891240 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 21, 149 |
| Conread position: | 20-267 |
| Cow position: | chr8:47674233-47673979 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 105 |
| Conread position: | 20-298 |
| Cow position: | chr8:12801800-12801507 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 17, 158 |
| Conread position: | 20-320 |
| Cow position: | chr8:10749746-10749436 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 13, 239 |
| Conread position: | 22-336 |
| Cow position: | chr8:59141706-59141380 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 22-337 |
| Cow position: | chr8:59261547-59261865 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 28-323 |
| Cow position: | chr8:60061759-60061452 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 28-326 |
| Cow position: | chr8:39809123-39809422 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 109 |
| Conread position: | 28-336 |
| Cow position: | chr8:48787800-48787484 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 28-337 |
| Cow position: | chr8:14927507-14927825 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 39-269 |
| Cow position: | chr8:41945077-41944838 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 52-323 |
| Cow position: | chr8:50287567-50287856 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 77, 272 |
| Conread position: | 52-337 |
| Cow position: | chr8:8911840-8911561 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 117, 69 |
| Conread position: | 79-280 |
| Cow position: | chr8:53430379-53430172 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 111 |
| Conread position: | 113-310 |
| Cow position: | chr8:45691735-45691940 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 160-336 |
| Cow position: | chr8:49215679-49215498 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 9, 175 |
| Conread position: | 168-336 |
| Cow position: | chr8:11969054-11969226 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 102, 165 |
| Conread position: | 169-337 |
| Cow position: | chr8:56883728-56883554 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 103, 0 |
Show alignments to all cow chromosomes.