Cow genome map

Conread name: Ovi1-UMC-pd3ov3-006-e05

Conread position: 1-196
Cow position: chr9:1995337-1995540 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 1-238
Cow position: chr9:30827790-30827544 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 38, 166

Conread position: 1-268
Cow position: chr9:25034657-25034932 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 38, 116

Conread position: 1-285
Cow position: chr9:50698356-50698064 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-305
Cow position: chr9:3804605-3804282 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 62

Conread position: 1-308
Cow position: chr9:3167982-3167673 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 207
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 47, 146

Conread position: 1-310
Cow position: chr9:5515473-5515154 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 299

Conread position: 1-312
Cow position: chr9:10937648-10937327 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 1-316
Cow position: chr9:17063329-17063662 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 236
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 38, 75

Conread position: 1-316
Cow position: chr9:28440862-28440535 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 229
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 38, 166

Conread position: 1-316
Cow position: chr9:28679025-28678697 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 227
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 38, 0

Conread position: 1-316
Cow position: chr9:45874391-45874061 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 1-316
Cow position: chr9:51211734-51211407 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 166

Conread position: 1-321
Cow position: chr9:32970000-32969672 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-323
Cow position: chr9:6250352-6250020 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 232

Conread position: 1-323
Cow position: chr9:18508769-18509093 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 237
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 44, 129

Conread position: 1-323
Cow position: chr9:22654629-22654292 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-323
Cow position: chr9:28022859-28022524 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 193

Conread position: 1-323
Cow position: chr9:29027158-29027488 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 307

Conread position: 1-323
Cow position: chr9:30673428-30673086 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 244
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 42, 0

Conread position: 1-323
Cow position: chr9:47003239-47002913 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 134, 43

Conread position: 1-323
Cow position: chr9:59481743-59482073 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 158

Conread position: 1-328
Cow position: chr9:21410350-21410008 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-331
Cow position: chr9:25188153-25187820 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 158

Conread position: 1-331
Cow position: chr9:51181124-51181474 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 42, 318

Conread position: 1-334
Cow position: chr9:31808630-31808285 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 220

Conread position: 1-336
Cow position: chr9:1981326-1980980 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 84

Conread position: 1-337
Cow position: chr9:10322856-10322509 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 240
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 47, 196

Conread position: 1-337
Cow position: chr9:17304923-17305272 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 1-337
Cow position: chr9:22432326-22431982 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 47

Conread position: 1-337
Cow position: chr9:34722961-34722611 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 21

Conread position: 2-303
Cow position: chr9:44819200-44818899 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 225

Conread position: 3-268
Cow position: chr9:25903560-25903291 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 189
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 16, 114

Conread position: 3-332
Cow position: chr9:35315829-35316154 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 118

Conread position: 8-316
Cow position: chr9:4942761-4943084 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 231
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 31, 115

Conread position: 15-268
Cow position: chr9:9014137-9013874 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 33, 0

Conread position: 15-323
Cow position: chr9:37161774-37162093 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 16-269
Cow position: chr9:30435610-30435348 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 27, 98

Conread position: 16-323
Cow position: chr9:60276977-60277295 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 16-325
Cow position: chr9:5005010-5004692 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 57

Conread position: 16-331
Cow position: chr9:59537136-59536808 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 0

Conread position: 17-238
Cow position: chr9:5141749-5141528 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 73, 56

Conread position: 17-330
Cow position: chr9:64015604-64015929 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 22, 150

Conread position: 17-337
Cow position: chr9:650994-651309 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 31

Conread position: 22-302
Cow position: chr9:26102071-26102350 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 107, 26

Conread position: 22-310
Cow position: chr9:8165848-8166149 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 23-326
Cow position: chr9:13474757-13475069 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 230
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 89, 61

Conread position: 28-337
Cow position: chr9:26083520-26083820 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 74, 44

Conread position: 32-268
Cow position: chr9:16629648-16629889 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 97, 133

Conread position: 41-266
Cow position: chr9:779798-780027 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 88, 124

Conread position: 42-323
Cow position: chr9:4533499-4533215 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 132

Conread position: 52-323
Cow position: chr9:3543862-3543581 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 198
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 77, 250

Conread position: 53-336
Cow position: chr9:43664793-43664510 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 62

Conread position: 128-323
Cow position: chr9:64120138-64119943 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 26, 99

Conread position: 160-323
Cow position: chr9:42569792-42569623 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.