Cow genome map

Conread name: Ovi1-UMC-pd3ov3-006-e05

Conread position: 1-133
Cow position: chrX:36136593-36136727 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 1-207
Cow position: chrX:27961818-27961602 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 1-214
Cow position: chrX:17666825-17667043 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 48, 0

Conread position: 1-228
Cow position: chrX:15590946-15590706 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 47, 0

Conread position: 1-263
Cow position: chrX:17477465-17477732 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 38, 166

Conread position: 1-268
Cow position: chrX:2561900-2562172 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 198
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 38, 165

Conread position: 1-268
Cow position: chrX:5394046-5394324 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 38, 170

Conread position: 1-268
Cow position: chrX:5864353-5864080 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 38, 116

Conread position: 1-268
Cow position: chrX:12287445-12287718 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 30, 165

Conread position: 1-268
Cow position: chrX:12354194-12353927 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 38, 49

Conread position: 1-268
Cow position: chrX:16276606-16276332 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 38, 166

Conread position: 1-268
Cow position: chrX:27425366-27425640 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 37, 166

Conread position: 1-268
Cow position: chrX:30201772-30202046 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 38, 166

Conread position: 1-300
Cow position: chrX:16041229-16041555 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 229
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 47, 181

Conread position: 1-312
Cow position: chrX:9126320-9125996 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 224
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 38, 0

Conread position: 1-312
Cow position: chrX:37813111-37812799 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 124, 66

Conread position: 1-313
Cow position: chrX:27986863-27987191 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 221
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 47, 0

Conread position: 1-316
Cow position: chrX:983623-983295 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 22, 167

Conread position: 1-316
Cow position: chrX:2103144-2102818 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 228
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 38, 0

Conread position: 1-316
Cow position: chrX:2605015-2604680 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 38, 0

Conread position: 1-316
Cow position: chrX:5335526-5335853 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 166

Conread position: 1-316
Cow position: chrX:7482591-7482265 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 31, 47

Conread position: 1-316
Cow position: chrX:8480610-8480282 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 38, 158

Conread position: 1-316
Cow position: chrX:8962614-8962943 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 226
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 38, 168

Conread position: 1-316
Cow position: chrX:12653564-12653893 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 38, 0

Conread position: 1-316
Cow position: chrX:13075737-13076065 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 233
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 30, 166

Conread position: 1-316
Cow position: chrX:24324614-24324948 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 38, 166

Conread position: 1-316
Cow position: chrX:28585939-28585612 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 227
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 38, 0

Conread position: 1-316
Cow position: chrX:29172803-29173130 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 38, 0

Conread position: 1-316
Cow position: chrX:29935556-29935228 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 225
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 38, 166

Conread position: 1-316
Cow position: chrX:32066208-32066532 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 124, 58

Conread position: 1-317
Cow position: chrX:13416473-13416798 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 218
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 46, 315

Conread position: 1-320
Cow position: chrX:11422830-11422500 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 230
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 38, 166

Conread position: 1-321
Cow position: chrX:21830489-21830159 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-322
Cow position: chrX:12668791-12669122 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 73

Conread position: 1-323
Cow position: chrX:321425-321094 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-323
Cow position: chrX:1547938-1547602 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-323
Cow position: chrX:13412174-13412506 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-323
Cow position: chrX:15126267-15126610 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 240
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 47, 0

Conread position: 1-323
Cow position: chrX:21580425-21580094 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 72

Conread position: 1-323
Cow position: chrX:23277983-23277652 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 33

Conread position: 1-323
Cow position: chrX:26757655-26757986 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 71

Conread position: 1-323
Cow position: chrX:38148555-38148219 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 72

Conread position: 1-324
Cow position: chrX:4797284-4796952 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 1-326
Cow position: chrX:26528934-26528601 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-326
Cow position: chrX:30365825-30366153 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 136

Conread position: 1-327
Cow position: chrX:29286393-29286051 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-327
Cow position: chrX:41850244-41850575 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 77

Conread position: 1-334
Cow position: chrX:12461771-12461436 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 239
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 123, 56

Conread position: 1-334
Cow position: chrX:28626668-28627021 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 242
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 45, 0

Conread position: 1-336
Cow position: chrX:5296585-5296935 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 81

Conread position: 1-336
Cow position: chrX:22816819-22816463 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 253
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 44, 179

Conread position: 1-336
Cow position: chrX:23020283-23019943 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 116

Conread position: 1-336
Cow position: chrX:27316235-27315889 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 312

Conread position: 1-337
Cow position: chrX:6281795-6282149 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 1-337
Cow position: chrX:12314792-12315145 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-337
Cow position: chrX:16015461-16015827 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 257
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 48, 0

Conread position: 2-224
Cow position: chrX:15623542-15623768 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 37, 115

Conread position: 2-261
Cow position: chrX:34219270-34219004 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 188

Conread position: 2-287
Cow position: chrX:29097154-29096857 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 46, 73

Conread position: 2-314
Cow position: chrX:29793072-29793398 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 32

Conread position: 2-316
Cow position: chrX:13096315-13096639 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 224
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 123, 163

Conread position: 2-316
Cow position: chrX:14460482-14460156 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 37, 165

Conread position: 2-323
Cow position: chrX:22489102-22488771 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 122

Conread position: 2-337
Cow position: chrX:21059742-21059393 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 258

Conread position: 3-269
Cow position: chrX:30011956-30011683 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 192
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 36, 164

Conread position: 3-316
Cow position: chrX:31494380-31494051 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 225
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 0

Conread position: 8-323
Cow position: chrX:18952729-18953055 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 65

Conread position: 14-336
Cow position: chrX:13082066-13082394 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 215
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 35, 172

Conread position: 16-264
Cow position: chrX:29885934-29885676 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 35, 61

Conread position: 16-310
Cow position: chrX:27006438-27006127 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 207
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 65

Conread position: 16-316
Cow position: chrX:11148391-11148703 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 23, 190

Conread position: 16-316
Cow position: chrX:14595792-14595478 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 23, 54

Conread position: 16-322
Cow position: chrX:30170885-30171206 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 23, 0

Conread position: 16-323
Cow position: chrX:23455073-23455391 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 77

Conread position: 16-323
Cow position: chrX:30182992-30183292 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 32, 143

Conread position: 16-323
Cow position: chrX:30231150-30231470 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 282

Conread position: 16-336
Cow position: chrX:28650609-28650936 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 272

Conread position: 16-337
Cow position: chrX:23389571-23389906 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 17-320
Cow position: chrX:35530802-35530491 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 112, 15

Conread position: 17-326
Cow position: chrX:5305099-5304776 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 31, 0

Conread position: 19-268
Cow position: chrX:5282828-5283091 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 147

Conread position: 19-268
Cow position: chrX:22618357-22618613 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 0

Conread position: 20-323
Cow position: chrX:29852622-29852939 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 75

Conread position: 22-326
Cow position: chrX:12183857-12183539 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 222
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 14, 93

Conread position: 23-326
Cow position: chrX:17613087-17613400 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 215
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 25, 198

Conread position: 28-336
Cow position: chrX:13053940-13053620 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 53

Conread position: 39-287
Cow position: chrX:16780225-16779970 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 87, 27

Conread position: 43-325
Cow position: chrX:33707350-33707058 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 193
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 77, 201

Conread position: 46-337
Cow position: chrX:28554522-28554221 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 52-269
Cow position: chrX:15486851-15487065 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 100, 67

Conread position: 56-320
Cow position: chrX:41102563-41102837 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 77, 0

Conread position: 106-323
Cow position: chrX:15599818-15599591 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 180
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 23, 204

Conread position: 160-337
Cow position: chrX:21589762-21589578 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 144
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 0

Conread position: 170-336
Cow position: chrX:30139910-30140081 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 100, 13

Conread position: 214-331
Cow position: chrX:30712327-30712207 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 0

Show alignments to all cow chromosomes.