Cow genome map

Conread name: Ovi1-UMC-pd3ov4-002-c04

Conread position: 1-213
Cow position: chr10:47908524-47908748 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 1-328
Cow position: chr10:14334250-14333919 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 282

Conread position: 1-328
Cow position: chr10:22343065-22343392 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 279

Conread position: 1-328
Cow position: chr10:31525324-31525656 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 243
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 73, 282

Conread position: 1-328
Cow position: chr10:46196639-46196977 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 245
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 55, 72

Conread position: 1-334
Cow position: chr10:17433956-17434287 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 252
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 46, 105

Conread position: 12-330
Cow position: chr10:22644614-22644929 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 58

Conread position: 14-328
Cow position: chr10:3521201-3520891 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 25, 144

Conread position: 34-328
Cow position: chr10:21517367-21517086 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 90, 42

Conread position: 39-215
Cow position: chr10:20369469-20369290 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 126

Conread position: 41-334
Cow position: chr10:29732387-29732672 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 235

Conread position: 42-197
Cow position: chr10:2119363-2119206 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 57, 10

Conread position: 42-328
Cow position: chr10:19494641-19494361 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 17, 181

Conread position: 42-328
Cow position: chr10:21898485-21898204 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 10

Conread position: 42-328
Cow position: chr10:24124410-24124135 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 191
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 65, 111

Conread position: 42-328
Cow position: chr10:34666096-34665813 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 159

Conread position: 43-328
Cow position: chr10:39039668-39039388 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 235

Conread position: 44-272
Cow position: chr10:13218374-13218150 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 55, 106

Conread position: 45-328
Cow position: chr10:8325464-8325185 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 55, 223

Conread position: 45-328
Cow position: chr10:20515080-20515364 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 205
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 54, 213

Conread position: 45-328
Cow position: chr10:38343718-38343438 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 232

Conread position: 45-328
Cow position: chr10:41635039-41635312 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 202
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 55, 7

Conread position: 46-218
Cow position: chr10:44707961-44707791 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 46-237
Cow position: chr10:57988345-57988150 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 46-242
Cow position: chr10:48375964-48375766 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 123

Conread position: 46-247
Cow position: chr10:22619435-22619237 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 84, 64

Conread position: 46-247
Cow position: chr10:38544241-38544044 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 53, 71

Conread position: 46-247
Cow position: chr10:68159986-68159785 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 53, 101

Conread position: 46-266
Cow position: chr10:48397457-48397243 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 203, 61

Conread position: 46-272
Cow position: chr10:33870936-33871171 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 54, 0

Conread position: 46-278
Cow position: chr10:29631143-29630907 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 39

Conread position: 46-288
Cow position: chr10:40150545-40150304 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 184
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 53, 100

Conread position: 46-324
Cow position: chr10:6258841-6258568 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 118, 185

Conread position: 46-326
Cow position: chr10:21739104-21738829 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 57, 28

Conread position: 46-326
Cow position: chr10:32702407-32702682 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 227

Conread position: 46-326
Cow position: chr10:41151083-41150807 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 230

Conread position: 46-327
Cow position: chr10:6556184-6556459 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 140

Conread position: 46-327
Cow position: chr10:10172386-10172662 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-327
Cow position: chr10:25651778-25651502 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 103

Conread position: 46-327
Cow position: chr10:39814747-39814473 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 37

Conread position: 46-328
Cow position: chr10:1379147-1379424 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 238

Conread position: 46-328
Cow position: chr10:7510278-7510000 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 57, 217

Conread position: 46-328
Cow position: chr10:7896830-7896553 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-328
Cow position: chr10:8291695-8291968 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 86

Conread position: 46-328
Cow position: chr10:16478392-16478661 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 53, 13

Conread position: 46-328
Cow position: chr10:16927320-16927598 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 103

Conread position: 46-328
Cow position: chr10:19142965-19142688 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 239

Conread position: 46-328
Cow position: chr10:19841330-19841607 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-328
Cow position: chr10:22102884-22103158 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 121

Conread position: 46-328
Cow position: chr10:22583399-22583126 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 189
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 87, 97

Conread position: 46-328
Cow position: chr10:22908817-22908542 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 53, 175

Conread position: 46-328
Cow position: chr10:23409599-23409322 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 227

Conread position: 46-328
Cow position: chr10:25339747-25340024 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 233

Conread position: 46-328
Cow position: chr10:28255757-28255481 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 229

Conread position: 46-328
Cow position: chr10:29101078-29100797 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 71, 242

Conread position: 46-328
Cow position: chr10:29845008-29844730 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 228

Conread position: 46-328
Cow position: chr10:30683840-30683563 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 238

Conread position: 46-328
Cow position: chr10:37771535-37771806 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 54, 182

Conread position: 46-328
Cow position: chr10:39209403-39209677 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 137

Conread position: 46-328
Cow position: chr10:39439803-39440079 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 188

Conread position: 46-328
Cow position: chr10:41159064-41159341 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-328
Cow position: chr10:41568752-41569029 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-328
Cow position: chr10:41878575-41878852 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-328
Cow position: chr10:57555684-57555412 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 54, 218

Conread position: 46-328
Cow position: chr10:62407131-62406840 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 193

Conread position: 46-330
Cow position: chr10:14805497-14805773 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 119

Conread position: 46-330
Cow position: chr10:54930564-54930294 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 54, 143

Conread position: 46-332
Cow position: chr10:21488607-21488880 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 178

Conread position: 46-333
Cow position: chr10:32828523-32828809 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 228

Conread position: 46-333
Cow position: chr10:39778480-39778199 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 110

Conread position: 46-335
Cow position: chr10:41773966-41773687 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 190
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 54, 168

Conread position: 46-335
Cow position: chr10:55094917-55095199 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 46-336
Cow position: chr10:29109335-29109046 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 12

Conread position: 46-336
Cow position: chr10:38849918-38850202 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 57, 101

Conread position: 49-248
Cow position: chr10:17957940-17957739 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 51, 5

Conread position: 52-219
Cow position: chr10:7280448-7280278 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 0

Conread position: 52-272
Cow position: chr10:55025236-55025457 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 47, 5

Conread position: 60-328
Cow position: chr10:42642258-42642522 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 40, 220

Conread position: 64-278
Cow position: chr10:51781772-51781556 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 36, 128

Conread position: 69-334
Cow position: chr10:19705952-19705693 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 30, 102

Conread position: 72-332
Cow position: chr10:42114194-42114442 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 187
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 28, 64

Conread position: 87-328
Cow position: chr10:21451110-21451346 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 13, 190

Conread position: 88-328
Cow position: chr10:8340661-8340887 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 187
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 162, 38

Conread position: 92-334
Cow position: chr10:14863671-14863896 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 157, 5

Conread position: 93-327
Cow position: chr10:48375751-48375526 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 156, 73

Conread position: 113-328
Cow position: chr10:28032207-28031999 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 136, 151

Conread position: 114-278
Cow position: chr10:48169149-48169314 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 136
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 132, 0

Conread position: 114-328
Cow position: chr10:38841883-38842089 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 135, 167

Conread position: 119-327
Cow position: chr10:22250089-22249889 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 131, 153

Conread position: 146-328
Cow position: chr10:54127306-54127478 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 147
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 67, 0

Conread position: 148-330
Cow position: chr10:4997568-4997394 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 101, 124

Conread position: 148-334
Cow position: chr10:20374657-20374479 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 146
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 102, 65

Conread position: 157-336
Cow position: chr10:34623776-34623603 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 92, 111

Conread position: 158-332
Cow position: chr10:10583907-10584073 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 91, 107

Conread position: 161-328
Cow position: chr10:42737967-42738128 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 88, 116

Conread position: 162-328
Cow position: chr10:20382186-20382027 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 88, 8

Conread position: 165-328
Cow position: chr10:24295511-24295357 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 85, 37

Conread position: 182-328
Cow position: chr10:15488327-15488465 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 68, 90

Show alignments to all cow chromosomes.