Cow genome map
| Conread name: | Ovi1-UMC-pd3ov4-002-c04 |
| Conread position: | 4-242 |
| Cow position: | chr12:18465422-18465657 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 95, 156 |
| Conread position: | 17-328 |
| Cow position: | chr12:756715-757027 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 58, 139 |
| Conread position: | 42-283 |
| Cow position: | chr12:35346104-35346343 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 122 |
| Conread position: | 43-328 |
| Cow position: | chr12:8676515-8676235 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 45-328 |
| Cow position: | chr12:1776389-1776099 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 173 |
| Conread position: | 45-328 |
| Cow position: | chr12:1887982-1887714 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 134 |
| Conread position: | 46-141 |
| Cow position: | chr12:11581579-11581677 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-216 |
| Cow position: | chr12:1404073-1404248 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-241 |
| Cow position: | chr12:43913416-43913613 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 53, 161 |
| Conread position: | 46-266 |
| Cow position: | chr12:24433507-24433284 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 114 |
| Conread position: | 46-269 |
| Cow position: | chr12:33120986-33121222 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-272 |
| Cow position: | chr12:33042938-33043159 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 52, 119 |
| Conread position: | 46-276 |
| Cow position: | chr12:21092149-21091916 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 46-278 |
| Cow position: | chr12:30685316-30685545 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 201, 65 |
| Conread position: | 46-285 |
| Cow position: | chr12:24994385-24994142 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-324 |
| Cow position: | chr12:22519402-22519130 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 184 |
| Conread position: | 46-326 |
| Cow position: | chr12:19870466-19870733 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 100, 64 |
| Conread position: | 46-326 |
| Cow position: | chr12:25261937-25261667 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 64 |
| Conread position: | 46-327 |
| Cow position: | chr12:21253008-21252732 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 50, 168 |
| Conread position: | 46-327 |
| Cow position: | chr12:21428015-21427739 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 239 |
| Conread position: | 46-327 |
| Cow position: | chr12:28005453-28005724 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 46-327 |
| Cow position: | chr12:34174920-34175197 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 230 |
| Conread position: | 46-328 |
| Cow position: | chr12:3362513-3362787 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 46-328 |
| Cow position: | chr12:6405061-6404784 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 225 |
| Conread position: | 46-328 |
| Cow position: | chr12:11099804-11100091 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 30, 246 |
| Conread position: | 46-328 |
| Cow position: | chr12:14660772-14660498 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 54, 220 |
| Conread position: | 46-328 |
| Cow position: | chr12:20461652-20461378 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 195 |
| Conread position: | 46-328 |
| Cow position: | chr12:21210242-21210519 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 46-328 |
| Cow position: | chr12:21429586-21429863 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr12:22568177-22567903 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 52, 103 |
| Conread position: | 46-328 |
| Cow position: | chr12:27854387-27854110 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 46-328 |
| Cow position: | chr12:32655128-32655404 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 229 |
| Conread position: | 46-328 |
| Cow position: | chr12:42606673-42606396 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 229 |
| Conread position: | 46-330 |
| Cow position: | chr12:27931331-27931053 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 228 |
| Conread position: | 46-332 |
| Cow position: | chr12:15950229-15949949 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 121 |
| Conread position: | 46-332 |
| Cow position: | chr12:22204134-22203853 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 121 |
| Conread position: | 46-334 |
| Cow position: | chr12:48471309-48471037 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 46-335 |
| Cow position: | chr12:42857956-42857673 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 121 |
| Conread position: | 56-212 |
| Cow position: | chr12:21897410-21897568 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 122 |
| Conread position: | 56-325 |
| Cow position: | chr12:25098887-25098627 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 44, 111 |
| Conread position: | 56-330 |
| Cow position: | chr12:37560601-37560860 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 44, 75 |
| Conread position: | 61-328 |
| Cow position: | chr12:20844470-20844732 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 42, 94 |
| Conread position: | 76-328 |
| Cow position: | chr12:25267804-25267557 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 199 |
Show alignments to all cow chromosomes.