Cow genome map
| Conread name: | Ovi1-UMC-pd3ov4-002-c04 |
| Conread position: | 1-336 |
| Cow position: | chr13:26845545-26845860 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 14-334 |
| Cow position: | chr13:9046067-9046388 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 266 |
| Conread position: | 24-328 |
| Cow position: | chr13:53553188-53552899 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 43-328 |
| Cow position: | chr13:37834972-37834686 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 56, 107 |
| Conread position: | 45-271 |
| Cow position: | chr13:36348779-36348553 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 119 |
| Conread position: | 46-159 |
| Cow position: | chr13:20540898-20540780 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-209 |
| Cow position: | chr13:11793720-11793554 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-219 |
| Cow position: | chr13:42217324-42217148 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-226 |
| Cow position: | chr13:11388355-11388538 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-235 |
| Cow position: | chr13:17309821-17310013 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-238 |
| Cow position: | chr13:3652955-3652755 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 69 |
| Conread position: | 46-257 |
| Cow position: | chr13:21697622-21697837 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-278 |
| Cow position: | chr13:679109-679341 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 203, 213 |
| Conread position: | 46-278 |
| Cow position: | chr13:9298804-9299040 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-279 |
| Cow position: | chr13:30654072-30653829 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 46-315 |
| Cow position: | chr13:50193040-50192776 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-320 |
| Cow position: | chr13:48358986-48359252 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 46-323 |
| Cow position: | chr13:33334961-33334691 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 46-325 |
| Cow position: | chr13:35758639-35758910 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 46-326 |
| Cow position: | chr13:33524598-33524323 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 76 |
| Conread position: | 46-326 |
| Cow position: | chr13:34050066-34050334 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 54, 144 |
| Conread position: | 46-327 |
| Cow position: | chr13:3760271-3759995 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 227 |
| Conread position: | 46-328 |
| Cow position: | chr13:5500641-5500364 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr13:5624389-5624114 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 122 |
| Conread position: | 46-328 |
| Cow position: | chr13:6358482-6358759 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr13:6666781-6666504 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 46-328 |
| Cow position: | chr13:11797349-11797071 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 185 |
| Conread position: | 46-328 |
| Cow position: | chr13:13326283-13326558 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 173 |
| Conread position: | 46-328 |
| Cow position: | chr13:13901224-13901499 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 126 |
| Conread position: | 46-328 |
| Cow position: | chr13:14186358-14186633 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 182 |
| Conread position: | 46-328 |
| Cow position: | chr13:14401750-14401473 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 46-328 |
| Cow position: | chr13:16253153-16252883 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 99 |
| Conread position: | 46-328 |
| Cow position: | chr13:21838849-21838574 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr13:30304555-30304831 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 105 |
| Conread position: | 46-328 |
| Cow position: | chr13:31729545-31729271 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 143 |
| Conread position: | 46-328 |
| Cow position: | chr13:32735834-32735557 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 238 |
| Conread position: | 46-328 |
| Cow position: | chr13:32923777-32923498 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 104 |
| Conread position: | 46-328 |
| Cow position: | chr13:32983986-32983709 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr13:34030955-34031228 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 43, 133 |
| Conread position: | 46-328 |
| Cow position: | chr13:34040976-34040697 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr13:34343264-34343541 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-328 |
| Cow position: | chr13:34938796-34939070 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 46-328 |
| Cow position: | chr13:42090335-42090058 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 225 |
| Conread position: | 46-328 |
| Cow position: | chr13:43981729-43981452 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 180 |
| Conread position: | 46-328 |
| Cow position: | chr13:47575450-47575723 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 201 |
| Conread position: | 46-328 |
| Cow position: | chr13:50110811-50111093 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 234 |
| Conread position: | 46-328 |
| Cow position: | chr13:60648447-60648172 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 46-332 |
| Cow position: | chr13:728587-728873 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 46-332 |
| Cow position: | chr13:43590675-43590945 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 92 |
| Conread position: | 46-335 |
| Cow position: | chr13:31610953-31610675 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 64 |
| Conread position: | 46-336 |
| Cow position: | chr13:15449788-15449527 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 54, 29 |
| Conread position: | 46-336 |
| Cow position: | chr13:60424108-60424387 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 47-330 |
| Cow position: | chr13:49494819-49494542 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 151 |
| Conread position: | 48-328 |
| Cow position: | chr13:34869332-34869607 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 198 |
| Conread position: | 52-328 |
| Cow position: | chr13:4942749-4943020 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 221 |
| Conread position: | 53-328 |
| Cow position: | chr13:31508272-31508541 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 128 |
| Conread position: | 56-288 |
| Cow position: | chr13:31732528-31732292 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 61-212 |
| Cow position: | chr13:15543974-15544129 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 61-286 |
| Cow position: | chr13:30239720-30239949 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 64-203 |
| Cow position: | chr13:34908320-34908179 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 74-328 |
| Cow position: | chr13:54240054-54239806 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 76-328 |
| Cow position: | chr13:11388595-11388840 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 155 |
| Conread position: | 77-272 |
| Cow position: | chr13:20574032-20573831 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 120-328 |
| Cow position: | chr13:15923023-15922823 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 129, 150 |
| Conread position: | 133-328 |
| Cow position: | chr13:1634544-1634730 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 143-328 |
| Cow position: | chr13:21058127-21058304 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 135, 57 |
| Conread position: | 143-336 |
| Cow position: | chr13:20540375-20540194 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 106, 26 |
| Conread position: | 148-328 |
| Cow position: | chr13:61952723-61952895 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 102, 133 |
| Conread position: | 168-328 |
| Cow position: | chr13:22614532-22614684 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 82, 104 |
Show alignments to all cow chromosomes.