Cow genome map
| Conread name: | Ovi1-UMC-pd3ov4-002-c04 |
| Conread position: | 1-328 |
| Cow position: | chr14:16272125-16271816 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 155, 89 |
| Conread position: | 1-328 |
| Cow position: | chr14:29774933-29774607 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 1-328 |
| Cow position: | chr14:33490022-33490346 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 192 |
| Conread position: | 1-330 |
| Cow position: | chr14:13579555-13579869 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 133 |
| Conread position: | 2-241 |
| Cow position: | chr14:35364660-35364422 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 82, 66 |
| Conread position: | 3-326 |
| Cow position: | chr14:37411943-37411606 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 53, 295 |
| Conread position: | 39-328 |
| Cow position: | chr14:44380572-44380856 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 232 |
| Conread position: | 40-328 |
| Cow position: | chr14:40167451-40167172 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 7, 128 |
| Conread position: | 42-327 |
| Cow position: | chr14:44290293-44290569 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 57, 226 |
| Conread position: | 42-332 |
| Cow position: | chr14:11476063-11475777 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 233 |
| Conread position: | 44-335 |
| Cow position: | chr14:18105653-18105935 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 179 |
| Conread position: | 45-326 |
| Cow position: | chr14:13862866-13862594 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 55, 123 |
| Conread position: | 45-328 |
| Cow position: | chr14:45082347-45082625 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 55, 228 |
| Conread position: | 45-334 |
| Cow position: | chr14:13462689-13462959 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 55, 82 |
| Conread position: | 46-168 |
| Cow position: | chr14:12123949-12123824 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-228 |
| Cow position: | chr14:37454714-37454528 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 156 |
| Conread position: | 46-239 |
| Cow position: | chr14:15274606-15274412 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 46-241 |
| Cow position: | chr14:17687730-17687927 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 46-248 |
| Cow position: | chr14:30660838-30660631 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 46-248 |
| Cow position: | chr14:38148220-38148427 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 54, 45 |
| Conread position: | 46-262 |
| Cow position: | chr14:35425351-35425568 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 46-271 |
| Cow position: | chr14:2295503-2295730 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 46-272 |
| Cow position: | chr14:12611643-12611861 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 53, 136 |
| Conread position: | 46-278 |
| Cow position: | chr14:16918482-16918257 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 200, 48 |
| Conread position: | 46-279 |
| Cow position: | chr14:50112592-50112829 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 46-325 |
| Cow position: | chr14:751798-752072 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 229 |
| Conread position: | 46-325 |
| Cow position: | chr14:46466894-46467164 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-326 |
| Cow position: | chr14:27978589-27978864 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 229 |
| Conread position: | 46-326 |
| Cow position: | chr14:44690413-44690683 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 60, 163 |
| Conread position: | 46-327 |
| Cow position: | chr14:2287498-2287774 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-327 |
| Cow position: | chr14:33392692-33392415 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 230 |
| Conread position: | 46-327 |
| Cow position: | chr14:45670802-45670522 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 233 |
| Conread position: | 46-328 |
| Cow position: | chr14:191278-191560 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 232 |
| Conread position: | 46-328 |
| Cow position: | chr14:5514161-5514434 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 46-328 |
| Cow position: | chr14:5530291-5530568 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-328 |
| Cow position: | chr14:7473585-7473859 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 220 |
| Conread position: | 46-328 |
| Cow position: | chr14:11152919-11152643 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 197 |
| Conread position: | 46-328 |
| Cow position: | chr14:12741803-12741536 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 62 |
| Conread position: | 46-328 |
| Cow position: | chr14:13304186-13304466 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 232 |
| Conread position: | 46-328 |
| Cow position: | chr14:13780185-13780459 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 203 |
| Conread position: | 46-328 |
| Cow position: | chr14:16342668-16342391 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 227 |
| Conread position: | 46-328 |
| Cow position: | chr14:16808089-16807813 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 46-328 |
| Cow position: | chr14:16999824-16999541 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 236 |
| Conread position: | 46-328 |
| Cow position: | chr14:17490105-17489830 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 46-328 |
| Cow position: | chr14:19327029-19326752 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-328 |
| Cow position: | chr14:20783701-20783977 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 181 |
| Conread position: | 46-328 |
| Cow position: | chr14:23256128-23255851 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr14:29046439-29046170 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 52, 167 |
| Conread position: | 46-328 |
| Cow position: | chr14:32448187-32448464 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 54, 154 |
| Conread position: | 46-328 |
| Cow position: | chr14:33678296-33678572 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 46-328 |
| Cow position: | chr14:37225387-37225666 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr14:42122344-42122072 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 115 |
| Conread position: | 46-328 |
| Cow position: | chr14:44553072-44553338 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 211, 54 |
| Conread position: | 46-328 |
| Cow position: | chr14:44774832-44774564 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 204, 16 |
| Conread position: | 46-328 |
| Cow position: | chr14:45027768-45027493 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 29 |
| Conread position: | 46-328 |
| Cow position: | chr14:45086455-45086727 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 77, 64 |
| Conread position: | 46-328 |
| Cow position: | chr14:45163457-45163731 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 46-328 |
| Cow position: | chr14:46390396-46390121 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 53, 92 |
| Conread position: | 46-328 |
| Cow position: | chr14:46502935-46503202 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 62, 207 |
| Conread position: | 46-328 |
| Cow position: | chr14:47656619-47656891 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 46-328 |
| Cow position: | chr14:48253084-48252817 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 45 |
| Conread position: | 46-328 |
| Cow position: | chr14:48601117-48600843 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 122 |
| Conread position: | 46-328 |
| Cow position: | chr14:50142209-50142485 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 141 |
| Conread position: | 46-331 |
| Cow position: | chr14:43559469-43559749 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 147 |
| Conread position: | 46-332 |
| Cow position: | chr14:22030216-22029938 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 47-327 |
| Cow position: | chr14:33712312-33712588 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 47-328 |
| Cow position: | chr14:1659689-1659965 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 228 |
| Conread position: | 47-328 |
| Cow position: | chr14:8413165-8413432 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 61, 83 |
| Conread position: | 48-235 |
| Cow position: | chr14:30583165-30582975 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 48-325 |
| Cow position: | chr14:35384388-35384121 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 52, 82 |
| Conread position: | 52-328 |
| Cow position: | chr14:45710500-45710228 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 224 |
| Conread position: | 52-328 |
| Cow position: | chr14:48826514-48826780 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 214 |
| Conread position: | 56-278 |
| Cow position: | chr14:17759657-17759430 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 57-278 |
| Cow position: | chr14:13321799-13321580 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 109, 56 |
| Conread position: | 58-328 |
| Cow position: | chr14:44480336-44480592 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 83-330 |
| Cow position: | chr14:44228565-44228813 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 23, 135 |
| Conread position: | 93-324 |
| Cow position: | chr14:13256695-13256919 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 72, 171 |
| Conread position: | 148-330 |
| Cow position: | chr14:39298627-39298798 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 6, 119 |
Show alignments to all cow chromosomes.