Cow genome map

Conread name: Ovi1-UMC-pd3ov4-002-c04

Conread position: 1-328
Cow position: chr16:1566628-1566298 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 183

Conread position: 1-328
Cow position: chr16:8815279-8814945 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 287

Conread position: 1-328
Cow position: chr16:26664578-26664892 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 1-328
Cow position: chr16:34531124-34531453 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 19

Conread position: 3-335
Cow position: chr16:29034766-29035072 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 226
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 246, 73

Conread position: 41-328
Cow position: chr16:8665199-8664922 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 57, 82

Conread position: 41-332
Cow position: chr16:17949368-17949081 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 59, 244

Conread position: 42-327
Cow position: chr16:48911554-48911290 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 42-328
Cow position: chr16:5662725-5663005 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 10

Conread position: 45-218
Cow position: chr16:28196353-28196177 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 55, 0

Conread position: 45-235
Cow position: chr16:5485611-5485804 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 54, 104

Conread position: 45-278
Cow position: chr16:31588291-31588049 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 61, 0

Conread position: 45-324
Cow position: chr16:49385918-49386188 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 187
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 48, 135

Conread position: 45-328
Cow position: chr16:10967216-10966935 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 204
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 58, 24

Conread position: 45-328
Cow position: chr16:18618241-18617961 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 75, 64

Conread position: 45-334
Cow position: chr16:51085045-51085328 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 179

Conread position: 45-336
Cow position: chr16:16229201-16229479 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 202, 65

Conread position: 46-218
Cow position: chr16:42735692-42735523 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 141
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 64, 0

Conread position: 46-248
Cow position: chr16:26979001-26979197 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 82, 54

Conread position: 46-255
Cow position: chr16:16270246-16270037 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 60, 140

Conread position: 46-272
Cow position: chr16:18497427-18497197 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 46-272
Cow position: chr16:49233602-49233374 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 41, 127

Conread position: 46-278
Cow position: chr16:3828451-3828214 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 46-278
Cow position: chr16:10374708-10374478 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 61

Conread position: 46-324
Cow position: chr16:1959733-1959464 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 118

Conread position: 46-324
Cow position: chr16:25456592-25456319 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 227

Conread position: 46-324
Cow position: chr16:27823359-27823093 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 191
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 63, 107

Conread position: 46-325
Cow position: chr16:5890889-5891159 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 53, 85

Conread position: 46-326
Cow position: chr16:1861124-1861404 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 104

Conread position: 46-326
Cow position: chr16:27712295-27712025 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 206
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 61, 92

Conread position: 46-327
Cow position: chr16:3088315-3088039 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-327
Cow position: chr16:5119130-5118854 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 227

Conread position: 46-327
Cow position: chr16:20193283-20193007 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-327
Cow position: chr16:27594396-27594672 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-327
Cow position: chr16:49221028-49220754 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 109

Conread position: 46-328
Cow position: chr16:33414-33697 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 235

Conread position: 46-328
Cow position: chr16:838206-838478 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 64

Conread position: 46-328
Cow position: chr16:2237880-2237606 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 86

Conread position: 46-328
Cow position: chr16:2410045-2409768 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 220

Conread position: 46-328
Cow position: chr16:2482247-2481985 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 207
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 110, 64

Conread position: 46-328
Cow position: chr16:2726326-2726049 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 238

Conread position: 46-328
Cow position: chr16:3330818-3331094 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 229

Conread position: 46-328
Cow position: chr16:4474717-4474436 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 64

Conread position: 46-328
Cow position: chr16:5527496-5527221 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 186

Conread position: 46-328
Cow position: chr16:7465494-7465771 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 93

Conread position: 46-328
Cow position: chr16:12537059-12536787 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 46-328
Cow position: chr16:18667276-18667551 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 209
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 49, 23

Conread position: 46-328
Cow position: chr16:19778763-19778486 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-328
Cow position: chr16:20202860-20203141 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 237

Conread position: 46-328
Cow position: chr16:23809243-23809525 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 113

Conread position: 46-328
Cow position: chr16:23984189-23984468 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 34

Conread position: 46-328
Cow position: chr16:27732493-27732215 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 239

Conread position: 46-328
Cow position: chr16:28169433-28169156 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-328
Cow position: chr16:28470181-28469896 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 246

Conread position: 46-328
Cow position: chr16:29047911-29048188 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 222

Conread position: 46-328
Cow position: chr16:37479967-37479690 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 227

Conread position: 46-328
Cow position: chr16:40295274-40295001 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 40

Conread position: 46-328
Cow position: chr16:44899763-44899500 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 204, 54

Conread position: 46-328
Cow position: chr16:54324446-54324163 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 233

Conread position: 46-330
Cow position: chr16:14664925-14664648 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 198

Conread position: 46-330
Cow position: chr16:23535012-23534730 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 105

Conread position: 46-332
Cow position: chr16:7675568-7675288 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 64

Conread position: 46-332
Cow position: chr16:15568146-15568426 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 226

Conread position: 46-332
Cow position: chr16:25442518-25442799 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 227

Conread position: 46-332
Cow position: chr16:43896373-43896094 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 203

Conread position: 46-334
Cow position: chr16:10439147-10439428 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 203

Conread position: 46-335
Cow position: chr16:1433076-1433357 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 67

Conread position: 46-335
Cow position: chr16:15185968-15186246 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 113

Conread position: 46-335
Cow position: chr16:51039225-51039516 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 63, 225

Conread position: 47-248
Cow position: chr16:3526136-3525932 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 49, 114

Conread position: 47-327
Cow position: chr16:28158457-28158746 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 246

Conread position: 47-328
Cow position: chr16:25258692-25258968 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 232

Conread position: 48-325
Cow position: chr16:5871778-5872055 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 216
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 52, 176

Conread position: 48-328
Cow position: chr16:23251079-23250818 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 51, 102

Conread position: 52-312
Cow position: chr16:32937415-32937660 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 181
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 59, 0

Conread position: 52-328
Cow position: chr16:25086507-25086777 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 211

Conread position: 52-330
Cow position: chr16:12245456-12245189 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 48, 127

Conread position: 58-328
Cow position: chr16:25342872-25343136 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 204
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 42, 150

Conread position: 64-328
Cow position: chr16:16240386-16240128 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 61

Conread position: 69-328
Cow position: chr16:25261385-25261639 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 35, 190

Conread position: 112-278
Cow position: chr16:55875353-55875194 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 137, 118

Conread position: 119-336
Cow position: chr16:22800709-22800499 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 36, 163

Conread position: 126-326
Cow position: chr16:20641154-20641344 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 120, 0

Conread position: 126-328
Cow position: chr16:16537773-16537966 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 149, 0

Conread position: 126-328
Cow position: chr16:42747248-42747054 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 39, 26

Conread position: 148-248
Cow position: chr16:37452976-37452875 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 148-328
Cow position: chr16:4300994-4300811 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 30, 23

Conread position: 180-327
Cow position: chr16:18580984-18580845 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 70, 92

Conread position: 195-332
Cow position: chr16:40556872-40556743 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 86

Show alignments to all cow chromosomes.