Cow genome map
| Conread name: | Ovi1-UMC-pd3ov4-002-c04 |
| Conread position: | 1-272 |
| Cow position: | chr18:54169897-54169622 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 117 |
| Conread position: | 1-326 |
| Cow position: | chr18:23799257-23799590 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 197 |
| Conread position: | 1-328 |
| Cow position: | chr18:4947563-4947895 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 85 |
| Conread position: | 1-328 |
| Cow position: | chr18:47743115-47743439 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 171 |
| Conread position: | 5-336 |
| Cow position: | chr18:33270520-33270856 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 279 |
| Conread position: | 31-326 |
| Cow position: | chr18:40344729-40344450 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 42-330 |
| Cow position: | chr18:29238554-29238835 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 106 |
| Conread position: | 43-323 |
| Cow position: | chr18:24714521-24714244 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 106, 243 |
| Conread position: | 43-328 |
| Cow position: | chr18:17962081-17961801 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 44-328 |
| Cow position: | chr18:15856866-15857138 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 46-212 |
| Cow position: | chr18:35054799-35054964 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 46-218 |
| Cow position: | chr18:28972215-28972040 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 46-233 |
| Cow position: | chr18:16089791-16089981 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 46-235 |
| Cow position: | chr18:27538534-27538726 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-235 |
| Cow position: | chr18:51695373-51695563 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 176 |
| Conread position: | 46-241 |
| Cow position: | chr18:51461379-51461181 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-326 |
| Cow position: | chr18:54272121-54272393 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 46-327 |
| Cow position: | chr18:23660830-23660554 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-327 |
| Cow position: | chr18:24617804-24618080 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr18:5534680-5534954 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 64 |
| Conread position: | 46-328 |
| Cow position: | chr18:11273186-11272910 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 46-328 |
| Cow position: | chr18:14132062-14132338 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 6 |
| Conread position: | 46-328 |
| Cow position: | chr18:14417638-14417917 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 229 |
| Conread position: | 46-328 |
| Cow position: | chr18:16174949-16174673 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 228 |
| Conread position: | 46-328 |
| Cow position: | chr18:19354038-19354315 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr18:19485814-19486094 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 53, 230 |
| Conread position: | 46-328 |
| Cow position: | chr18:25352931-25353209 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 239 |
| Conread position: | 46-328 |
| Cow position: | chr18:27988857-27989134 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 46-328 |
| Cow position: | chr18:29864939-29864663 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 138 |
| Conread position: | 46-328 |
| Cow position: | chr18:32166252-32165981 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 54, 134 |
| Conread position: | 46-328 |
| Cow position: | chr18:36510288-36510565 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 46-328 |
| Cow position: | chr18:40482668-40482944 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 109 |
| Conread position: | 46-328 |
| Cow position: | chr18:51343354-51343631 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-328 |
| Cow position: | chr18:51482525-51482802 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-328 |
| Cow position: | chr18:52654487-52654760 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 46-328 |
| Cow position: | chr18:54004509-54004230 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 207 |
| Conread position: | 46-332 |
| Cow position: | chr18:25922062-25922342 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 227 |
| Conread position: | 46-332 |
| Cow position: | chr18:32769396-32769676 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 46-332 |
| Cow position: | chr18:37507633-37507916 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 231 |
| Conread position: | 46-332 |
| Cow position: | chr18:51274409-51274129 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 149 |
| Conread position: | 56-264 |
| Cow position: | chr18:51593682-51593887 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 194, 96 |
| Conread position: | 56-328 |
| Cow position: | chr18:23442133-23441870 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 117 |
| Conread position: | 56-330 |
| Cow position: | chr18:35290319-35290600 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 45, 241 |
| Conread position: | 61-332 |
| Cow position: | chr18:17999769-17999507 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 100 |
| Conread position: | 79-328 |
| Cow position: | chr18:27836367-27836137 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 170, 31 |
| Conread position: | 82-326 |
| Cow position: | chr18:46875658-46875423 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 115, 24 |
| Conread position: | 87-328 |
| Cow position: | chr18:41839074-41838842 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 159, 180 |
| Conread position: | 93-333 |
| Cow position: | chr18:54025529-54025762 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 157, 184 |
| Conread position: | 112-327 |
| Cow position: | chr18:37584167-37583960 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 137, 160 |
| Conread position: | 119-329 |
| Cow position: | chr18:1046023-1046225 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 130, 144 |
| Conread position: | 139-326 |
| Cow position: | chr18:23703319-23703141 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 107, 42 |
| Conread position: | 153-328 |
| Cow position: | chr18:16465080-16464913 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 97, 119 |
| Conread position: | 160-327 |
| Cow position: | chr18:9722412-9722571 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 90, 112 |
| Conread position: | 161-327 |
| Cow position: | chr18:37701703-37701545 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 111 |
Show alignments to all cow chromosomes.