Cow genome map
| Conread name: | Ovi1-UMC-pd3ov4-002-c04 |
| Conread position: | 1-333 |
| Cow position: | chr19:3174997-3175322 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 104, 111 |
| Conread position: | 1-334 |
| Cow position: | chr19:28405106-28404772 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 12-243 |
| Cow position: | chr19:161506-161273 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 45-328 |
| Cow position: | chr19:39183870-39183591 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 240 |
| Conread position: | 45-328 |
| Cow position: | chr19:40886067-40885789 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 153 |
| Conread position: | 46-192 |
| Cow position: | chr19:256963-257110 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 55, 71 |
| Conread position: | 46-192 |
| Cow position: | chr19:437763-437614 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-266 |
| Cow position: | chr19:265330-265553 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 55, 100 |
| Conread position: | 46-272 |
| Cow position: | chr19:206184-206418 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 46-278 |
| Cow position: | chr19:342923-343160 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 57, 201 |
| Conread position: | 46-326 |
| Cow position: | chr19:173935-174210 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 46-326 |
| Cow position: | chr19:30453679-30453406 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 85 |
| Conread position: | 46-327 |
| Cow position: | chr19:1587562-1587286 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 232 |
| Conread position: | 46-327 |
| Cow position: | chr19:43146335-43146609 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 46-328 |
| Cow position: | chr19:376050-375770 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 54, 109 |
| Conread position: | 46-328 |
| Cow position: | chr19:774280-774557 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr19:891960-891686 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 92 |
| Conread position: | 46-328 |
| Cow position: | chr19:1583928-1584207 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 217 |
| Conread position: | 46-328 |
| Cow position: | chr19:2272440-2272167 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 121 |
| Conread position: | 46-328 |
| Cow position: | chr19:3139646-3139916 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 111 |
| Conread position: | 46-328 |
| Cow position: | chr19:4387277-4387553 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 226 |
| Conread position: | 46-328 |
| Cow position: | chr19:5730517-5730793 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 166 |
| Conread position: | 46-328 |
| Cow position: | chr19:5899833-5899557 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 46-328 |
| Cow position: | chr19:7343743-7344020 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 220 |
| Conread position: | 46-328 |
| Cow position: | chr19:12774780-12775070 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-328 |
| Cow position: | chr19:20106402-20106679 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr19:28595212-28595493 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 53, 230 |
| Conread position: | 46-328 |
| Cow position: | chr19:33875087-33875364 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-328 |
| Cow position: | chr19:33943243-33943520 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-328 |
| Cow position: | chr19:39392185-39392462 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 227 |
| Conread position: | 46-328 |
| Cow position: | chr19:40471025-40470749 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 180 |
| Conread position: | 46-328 |
| Cow position: | chr19:40850790-40850515 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 46-328 |
| Cow position: | chr19:52150006-52149729 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-330 |
| Cow position: | chr19:16318953-16318673 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-330 |
| Cow position: | chr19:28579999-28579711 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 234 |
| Conread position: | 46-330 |
| Cow position: | chr19:30559863-30560140 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 115 |
| Conread position: | 46-334 |
| Cow position: | chr19:39666872-39666592 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 47-328 |
| Cow position: | chr19:166451-166179 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 51, 82 |
| Conread position: | 48-328 |
| Cow position: | chr19:32468581-32468856 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 225 |
| Conread position: | 106-330 |
| Cow position: | chr19:337325-337108 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 169 |
| Conread position: | 112-335 |
| Cow position: | chr19:39689510-39689725 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 137, 160 |
| Conread position: | 146-328 |
| Cow position: | chr19:15446084-15445911 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 153-328 |
| Cow position: | chr19:21339061-21338894 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 96, 128 |
Show alignments to all cow chromosomes.