Cow genome map
| Conread name: | Ovi1-UMC-pd3ov4-002-c04 |
| Conread position: | 1-328 |
| Cow position: | chr20:5791876-5792196 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 12-336 |
| Cow position: | chr20:10101421-10101097 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 42-328 |
| Cow position: | chr20:8972545-8972257 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 240 |
| Conread position: | 46-227 |
| Cow position: | chr20:12042059-12042243 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-234 |
| Cow position: | chr20:21718071-21718261 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 57, 179 |
| Conread position: | 46-247 |
| Cow position: | chr20:9344588-9344787 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 121 |
| Conread position: | 46-271 |
| Cow position: | chr20:9533438-9533660 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 90 |
| Conread position: | 46-278 |
| Cow position: | chr20:19214616-19214842 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 54, 133 |
| Conread position: | 46-278 |
| Cow position: | chr20:28162462-28162698 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 46-286 |
| Cow position: | chr20:5536581-5536826 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-326 |
| Cow position: | chr20:19341464-19341737 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 46-326 |
| Cow position: | chr20:28563943-28563664 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 242 |
| Conread position: | 46-327 |
| Cow position: | chr20:824404-824680 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-327 |
| Cow position: | chr20:25899325-25899601 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-327 |
| Cow position: | chr20:30429909-30430183 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 175 |
| Conread position: | 46-328 |
| Cow position: | chr20:13764532-13764810 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 228 |
| Conread position: | 46-328 |
| Cow position: | chr20:15293617-15293895 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 228 |
| Conread position: | 46-328 |
| Cow position: | chr20:17660108-17659829 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 234 |
| Conread position: | 46-328 |
| Cow position: | chr20:21916274-21916551 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 227 |
| Conread position: | 46-328 |
| Cow position: | chr20:23468031-23467754 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-328 |
| Cow position: | chr20:23800520-23800799 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 240 |
| Conread position: | 46-328 |
| Cow position: | chr20:24615268-24614995 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 87 |
| Conread position: | 46-328 |
| Cow position: | chr20:25849192-25848919 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 174 |
| Conread position: | 46-328 |
| Cow position: | chr20:29950162-29950438 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 226 |
| Conread position: | 46-328 |
| Cow position: | chr20:35018581-35018845 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 46-328 |
| Cow position: | chr20:35126299-35126570 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 46-328 |
| Cow position: | chr20:37581805-37582079 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 46-328 |
| Cow position: | chr20:41364004-41363731 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 46-332 |
| Cow position: | chr20:15096258-15095975 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 46-332 |
| Cow position: | chr20:30687222-30687499 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 54, 170 |
| Conread position: | 46-333 |
| Cow position: | chr20:15067094-15067366 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 204, 64 |
| Conread position: | 46-335 |
| Cow position: | chr20:16178111-16177828 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 53, 168 |
| Conread position: | 47-332 |
| Cow position: | chr20:9547284-9547564 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 221 |
| Conread position: | 48-326 |
| Cow position: | chr20:20441312-20441039 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 227 |
| Conread position: | 48-327 |
| Cow position: | chr20:26054051-26053778 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 148 |
| Conread position: | 52-328 |
| Cow position: | chr20:13793670-13793932 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 48, 103 |
| Conread position: | 56-248 |
| Cow position: | chr20:22697369-22697177 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 56-328 |
| Cow position: | chr20:19439563-19439829 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 219 |
| Conread position: | 56-332 |
| Cow position: | chr20:32120973-32121230 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 193, 52 |
| Conread position: | 56-334 |
| Cow position: | chr20:18968127-18968397 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 75 |
| Conread position: | 56-336 |
| Cow position: | chr20:8366078-8365800 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 104 |
| Conread position: | 120-267 |
| Cow position: | chr20:36615937-36615792 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 130, 35 |
| Conread position: | 124-328 |
| Cow position: | chr20:12692777-12692974 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 126, 150 |
| Conread position: | 158-306 |
| Cow position: | chr20:27870983-27871131 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 83 |
| Conread position: | 180-328 |
| Cow position: | chr20:12436626-12436486 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 187-327 |
| Cow position: | chr20:33598221-33598353 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 63, 85 |
| Conread position: | 200-323 |
| Cow position: | chr20:14722954-14722838 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 72 |
Show alignments to all cow chromosomes.