Cow genome map
| Conread name: | Ovi1-UMC-pd3ov4-002-c04 |
| Conread position: | 1-279 |
| Cow position: | chr21:29257411-29257121 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 54, 106 |
| Conread position: | 1-327 |
| Cow position: | chr21:39426758-39427090 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 277 |
| Conread position: | 1-332 |
| Cow position: | chr21:21916925-21917253 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 4-249 |
| Cow position: | chr21:23297064-23296816 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 165 |
| Conread position: | 21-334 |
| Cow position: | chr21:37149704-37150005 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 87, 194 |
| Conread position: | 28-328 |
| Cow position: | chr21:7154066-7154361 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 71 |
| Conread position: | 30-328 |
| Cow position: | chr21:2417937-2418229 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 247 |
| Conread position: | 35-328 |
| Cow position: | chr21:1194167-1194462 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 256 |
| Conread position: | 42-293 |
| Cow position: | chr21:6626277-6626526 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 57, 176 |
| Conread position: | 42-329 |
| Cow position: | chr21:30785-31055 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 207, 10 |
| Conread position: | 46-212 |
| Cow position: | chr21:10851826-10851995 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 46-212 |
| Cow position: | chr21:38802186-38802355 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-218 |
| Cow position: | chr21:33253930-33254105 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 69, 64 |
| Conread position: | 46-228 |
| Cow position: | chr21:26648963-26648780 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 152 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 53, 101 |
| Conread position: | 46-231 |
| Cow position: | chr21:33710898-33711086 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-248 |
| Cow position: | chr21:1688420-1688219 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 46-248 |
| Cow position: | chr21:27150229-27150438 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 46-271 |
| Cow position: | chr21:26836939-26837168 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-271 |
| Cow position: | chr21:34000335-34000100 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 46-277 |
| Cow position: | chr21:7591407-7591640 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 100 |
| Conread position: | 46-277 |
| Cow position: | chr21:13298342-13298571 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 160 |
| Conread position: | 46-323 |
| Cow position: | chr21:9893718-9893989 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 46-326 |
| Cow position: | chr21:10568448-10568721 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 46-327 |
| Cow position: | chr21:6414275-6413999 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr21:147670-147946 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 122 |
| Conread position: | 46-328 |
| Cow position: | chr21:2880076-2879803 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 149 |
| Conread position: | 46-328 |
| Cow position: | chr21:3780522-3780801 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 233 |
| Conread position: | 46-328 |
| Cow position: | chr21:5018889-5019168 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 229 |
| Conread position: | 46-328 |
| Cow position: | chr21:11507363-11507628 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 154 |
| Conread position: | 46-328 |
| Cow position: | chr21:17224948-17224666 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 219 |
| Conread position: | 46-328 |
| Cow position: | chr21:19612509-19612785 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 229 |
| Conread position: | 46-328 |
| Cow position: | chr21:22751694-22751420 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 46-328 |
| Cow position: | chr21:26402008-26401727 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 92 |
| Conread position: | 46-328 |
| Cow position: | chr21:27069215-27068938 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 220 |
| Conread position: | 46-328 |
| Cow position: | chr21:30563419-30563689 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 48 |
| Conread position: | 46-328 |
| Cow position: | chr21:30597721-30597444 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 227 |
| Conread position: | 46-328 |
| Cow position: | chr21:31250742-31251019 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 70 |
| Conread position: | 46-328 |
| Cow position: | chr21:31514567-31514291 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 132 |
| Conread position: | 46-328 |
| Cow position: | chr21:35143942-35143669 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 203 |
| Conread position: | 46-328 |
| Cow position: | chr21:37372975-37373252 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-328 |
| Cow position: | chr21:40269923-40269645 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 228 |
| Conread position: | 46-328 |
| Cow position: | chr21:42915556-42915830 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 176 |
| Conread position: | 46-328 |
| Cow position: | chr21:47647080-47647358 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 216 |
| Conread position: | 46-328 |
| Cow position: | chr21:47942698-47942973 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 46-329 |
| Cow position: | chr21:29003779-29003493 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 52, 215 |
| Conread position: | 46-330 |
| Cow position: | chr21:2539329-2539052 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 46-331 |
| Cow position: | chr21:21701659-21701941 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 54, 136 |
| Conread position: | 46-334 |
| Cow position: | chr21:361423-361700 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 46-334 |
| Cow position: | chr21:34655577-34655861 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 220 |
| Conread position: | 46-336 |
| Cow position: | chr21:26635408-26635120 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-336 |
| Cow position: | chr21:31639662-31639946 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 61, 231 |
| Conread position: | 47-159 |
| Cow position: | chr21:27567495-27567608 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 47-332 |
| Cow position: | chr21:44764205-44763924 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 227 |
| Conread position: | 52-328 |
| Cow position: | chr21:468652-468923 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 71 |
| Conread position: | 52-328 |
| Cow position: | chr21:28257177-28257445 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 87 |
| Conread position: | 54-328 |
| Cow position: | chr21:27285216-27285473 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 56-212 |
| Cow position: | chr21:2712667-2712814 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 56-326 |
| Cow position: | chr21:9865304-9865048 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 56-328 |
| Cow position: | chr21:28614087-28614338 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 200, 43 |
| Conread position: | 56-336 |
| Cow position: | chr21:2512608-2512883 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 216 |
| Conread position: | 59-278 |
| Cow position: | chr21:4182315-4182540 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 61-272 |
| Cow position: | chr21:997079-996859 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 39, 152 |
| Conread position: | 61-330 |
| Cow position: | chr21:3115380-3115632 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 189, 29 |
| Conread position: | 73-328 |
| Cow position: | chr21:18816478-18816233 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 34, 75 |
| Conread position: | 87-326 |
| Cow position: | chr21:45783225-45783457 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 89-319 |
| Cow position: | chr21:41885752-41885530 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 167, 176 |
| Conread position: | 108-326 |
| Cow position: | chr21:2672460-2672254 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 9, 91 |
| Conread position: | 114-326 |
| Cow position: | chr21:4096498-4096702 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 110, 103 |
| Conread position: | 133-282 |
| Cow position: | chr21:39092209-39092361 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 148-328 |
| Cow position: | chr21:27567629-27567801 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 102, 133 |
| Conread position: | 180-328 |
| Cow position: | chr21:4036135-4036275 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 70, 92 |
Show alignments to all cow chromosomes.