Cow genome map
| Conread name: | Ovi1-UMC-pd3ov4-002-c04 |
| Conread position: | 1-328 |
| Cow position: | chr23:2793747-2793420 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 276 |
| Conread position: | 1-328 |
| Cow position: | chr23:4639081-4638747 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 284 |
| Conread position: | 1-328 |
| Cow position: | chr23:38579204-38579522 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 78 |
| Conread position: | 4-335 |
| Cow position: | chr23:29450815-29450473 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 214 |
| Conread position: | 42-328 |
| Cow position: | chr23:4435223-4435504 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 54, 147 |
| Conread position: | 45-328 |
| Cow position: | chr23:11714293-11714015 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 230 |
| Conread position: | 46-207 |
| Cow position: | chr23:11931735-11931898 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 46-261 |
| Cow position: | chr23:23172350-23172569 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-278 |
| Cow position: | chr23:15875996-15875758 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 224 |
| Conread position: | 46-327 |
| Cow position: | chr23:7314484-7314760 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-327 |
| Cow position: | chr23:41141653-41141377 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr23:608289-608563 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 226 |
| Conread position: | 46-328 |
| Cow position: | chr23:964921-964651 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 46-328 |
| Cow position: | chr23:2759472-2759749 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-328 |
| Cow position: | chr23:3879512-3879235 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 231 |
| Conread position: | 46-328 |
| Cow position: | chr23:4818596-4818871 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 151 |
| Conread position: | 46-328 |
| Cow position: | chr23:5872998-5872721 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 229 |
| Conread position: | 46-328 |
| Cow position: | chr23:14961378-14961101 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 114 |
| Conread position: | 46-328 |
| Cow position: | chr23:14972382-14972105 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 53, 230 |
| Conread position: | 46-328 |
| Cow position: | chr23:15178637-15178914 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 238 |
| Conread position: | 46-328 |
| Cow position: | chr23:15218314-15218037 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 238 |
| Conread position: | 46-328 |
| Cow position: | chr23:15527151-15527431 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 230 |
| Conread position: | 46-328 |
| Cow position: | chr23:16055347-16055624 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 46-328 |
| Cow position: | chr23:22145732-22145455 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-328 |
| Cow position: | chr23:23283099-23283382 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 54, 220 |
| Conread position: | 46-328 |
| Cow position: | chr23:28218999-28219285 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 238 |
| Conread position: | 46-328 |
| Cow position: | chr23:28304489-28304766 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 46-328 |
| Cow position: | chr23:29478786-29479058 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 54 |
| Conread position: | 46-328 |
| Cow position: | chr23:32351188-32350911 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-330 |
| Cow position: | chr23:3707977-3708255 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 122 |
| Conread position: | 46-330 |
| Cow position: | chr23:31164377-31164654 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 43 |
| Conread position: | 46-332 |
| Cow position: | chr23:20154653-20154373 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 225 |
| Conread position: | 46-335 |
| Cow position: | chr23:1957744-1958018 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 48 |
| Conread position: | 46-335 |
| Cow position: | chr23:36029806-36029524 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 119 |
| Conread position: | 46-336 |
| Cow position: | chr23:2577201-2577486 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 47-328 |
| Cow position: | chr23:11780354-11780639 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 53, 264 |
| Conread position: | 47-330 |
| Cow position: | chr23:16497673-16497401 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 199, 63 |
| Conread position: | 47-335 |
| Cow position: | chr23:2439715-2439429 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 220 |
| Conread position: | 51-328 |
| Cow position: | chr23:2025503-2025230 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 50, 123 |
| Conread position: | 52-328 |
| Cow position: | chr23:4890262-4890533 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 229 |
| Conread position: | 52-329 |
| Cow position: | chr23:1012239-1011971 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 94 |
| Conread position: | 53-328 |
| Cow position: | chr23:19491132-19491401 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 219 |
| Conread position: | 61-328 |
| Cow position: | chr23:31648443-31648185 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 39, 191 |
| Conread position: | 65-334 |
| Cow position: | chr23:1400616-1400353 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 38, 208 |
| Conread position: | 87-328 |
| Cow position: | chr23:1340187-1339951 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 13, 184 |
| Conread position: | 91-336 |
| Cow position: | chr23:6220904-6221146 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 166 |
| Conread position: | 93-325 |
| Cow position: | chr23:4755352-4755572 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 93-328 |
| Cow position: | chr23:13512698-13512924 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 54, 85 |
| Conread position: | 137-325 |
| Cow position: | chr23:1022291-1022111 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 118, 128 |
| Conread position: | 141-328 |
| Cow position: | chr23:7356909-7357088 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 109, 126 |
| Conread position: | 148-334 |
| Cow position: | chr23:25677277-25677103 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 101, 115 |
| Conread position: | 156-330 |
| Cow position: | chr23:22168355-22168521 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 160-322 |
| Cow position: | chr23:4514659-4514812 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 161-325 |
| Cow position: | chr23:10874911-10874755 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 89, 111 |
| Conread position: | 164-328 |
| Cow position: | chr23:1050836-1050683 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 30 |
Show alignments to all cow chromosomes.