Cow genome map
| Conread name: | Ovi1-UMC-pd3ov4-002-c04 |
| Conread position: | 1-324 |
| Cow position: | chr24:4413946-4413623 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 73, 99 |
| Conread position: | 1-326 |
| Cow position: | chr24:16098125-16098455 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 91, 55 |
| Conread position: | 1-328 |
| Cow position: | chr24:13233859-13234188 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 181 |
| Conread position: | 1-328 |
| Cow position: | chr24:17322292-17322616 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 73, 122 |
| Conread position: | 1-336 |
| Cow position: | chr24:13189773-13190111 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 281 |
| Conread position: | 2-326 |
| Cow position: | chr24:12334129-12333800 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 274 |
| Conread position: | 3-326 |
| Cow position: | chr24:36557958-36557632 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 21-328 |
| Cow position: | chr24:19183803-19184105 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 35-328 |
| Cow position: | chr24:14382977-14382689 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 40-328 |
| Cow position: | chr24:17300250-17299970 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 250, 57 |
| Conread position: | 42-242 |
| Cow position: | chr24:12204683-12204482 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 43-248 |
| Cow position: | chr24:29352196-29351992 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 57, 84 |
| Conread position: | 43-328 |
| Cow position: | chr24:14755659-14755939 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 57, 234 |
| Conread position: | 43-328 |
| Cow position: | chr24:17313016-17312745 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 74 |
| Conread position: | 45-278 |
| Cow position: | chr24:13179359-13179124 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 54, 204 |
| Conread position: | 45-328 |
| Cow position: | chr24:19703149-19703427 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 228 |
| Conread position: | 46-172 |
| Cow position: | chr24:44019172-44019301 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-188 |
| Cow position: | chr24:6036652-6036797 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 46-212 |
| Cow position: | chr24:6323687-6323518 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-227 |
| Cow position: | chr24:30865160-30865346 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 46-240 |
| Cow position: | chr24:6023424-6023228 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 53, 90 |
| Conread position: | 46-244 |
| Cow position: | chr24:9545718-9545920 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 53, 76 |
| Conread position: | 46-269 |
| Cow position: | chr24:12163895-12164116 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 57, 123 |
| Conread position: | 46-278 |
| Cow position: | chr24:17410120-17410358 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 217 |
| Conread position: | 46-278 |
| Cow position: | chr24:35868921-35868690 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 54, 119 |
| Conread position: | 46-278 |
| Cow position: | chr24:38639182-38639427 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 194 |
| Conread position: | 46-326 |
| Cow position: | chr24:6130472-6130739 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 116 |
| Conread position: | 46-326 |
| Cow position: | chr24:7063204-7063478 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 46-327 |
| Cow position: | chr24:6963087-6962811 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 229 |
| Conread position: | 46-327 |
| Cow position: | chr24:13043964-13043689 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-327 |
| Cow position: | chr24:23504196-23503920 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr24:146948-146669 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 46-328 |
| Cow position: | chr24:6338045-6338323 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr24:6668096-6667823 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 46-328 |
| Cow position: | chr24:9090394-9090120 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 67 |
| Conread position: | 46-328 |
| Cow position: | chr24:12127447-12127170 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 68, 238 |
| Conread position: | 46-328 |
| Cow position: | chr24:12149631-12149350 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 53, 234 |
| Conread position: | 46-328 |
| Cow position: | chr24:17957883-17957591 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 248 |
| Conread position: | 46-328 |
| Cow position: | chr24:19468945-19468668 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 231 |
| Conread position: | 46-328 |
| Cow position: | chr24:20286249-20285972 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 238 |
| Conread position: | 46-328 |
| Cow position: | chr24:22972728-22973005 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 46-328 |
| Cow position: | chr24:29188950-29189227 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 138 |
| Conread position: | 46-328 |
| Cow position: | chr24:38585471-38585195 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 46-328 |
| Cow position: | chr24:40468835-40469114 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 229 |
| Conread position: | 46-328 |
| Cow position: | chr24:41004150-41004429 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 240 |
| Conread position: | 46-332 |
| Cow position: | chr24:19835070-19835348 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 150 |
| Conread position: | 46-332 |
| Cow position: | chr24:23094361-23094082 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 177 |
| Conread position: | 46-332 |
| Cow position: | chr24:25438265-25438546 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 227 |
| Conread position: | 46-335 |
| Cow position: | chr24:12087863-12088147 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 46-335 |
| Cow position: | chr24:39678974-39679275 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 54, 185 |
| Conread position: | 47-326 |
| Cow position: | chr24:6353798-6354073 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 30, 219 |
| Conread position: | 48-328 |
| Cow position: | chr24:33935053-33935328 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 52, 236 |
| Conread position: | 52-278 |
| Cow position: | chr24:12238954-12239187 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 112 |
| Conread position: | 52-328 |
| Cow position: | chr24:23097093-23096824 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 56-271 |
| Cow position: | chr24:8150651-8150429 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 56-327 |
| Cow position: | chr24:209335-209070 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 58-328 |
| Cow position: | chr24:16082825-16082560 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 217 |
| Conread position: | 58-332 |
| Cow position: | chr24:7089323-7089057 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 71-328 |
| Cow position: | chr24:16560622-16560369 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 29, 172 |
| Conread position: | 72-332 |
| Cow position: | chr24:9073636-9073382 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 77-328 |
| Cow position: | chr24:11151430-11151188 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 24, 145 |
| Conread position: | 118-327 |
| Cow position: | chr24:40550361-40550562 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 131, 154 |
| Conread position: | 148-327 |
| Cow position: | chr24:5991395-5991225 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 102, 124 |
| Conread position: | 152-328 |
| Cow position: | chr24:18268730-18268561 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 98, 121 |
| Conread position: | 161-272 |
| Cow position: | chr24:36723831-36723942 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.