Cow genome map
| Conread name: | Ovi1-UMC-pd3ov4-002-c04 |
| Conread position: | 1-242 |
| Cow position: | chr25:14956901-14956664 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 55 |
| Conread position: | 1-328 |
| Cow position: | chr25:17655986-17656301 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 19 |
| Conread position: | 1-335 |
| Cow position: | chr25:27523051-27522720 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 142 |
| Conread position: | 42-325 |
| Cow position: | chr25:26928902-26929178 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 42-332 |
| Cow position: | chr25:35588713-35588428 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 58, 81 |
| Conread position: | 45-218 |
| Cow position: | chr25:33575314-33575140 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 56, 77 |
| Conread position: | 45-328 |
| Cow position: | chr25:18305763-18306050 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 230 |
| Conread position: | 45-334 |
| Cow position: | chr25:11931170-11930880 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 165 |
| Conread position: | 46-165 |
| Cow position: | chr25:17558939-17558817 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-238 |
| Cow position: | chr25:32581148-32581343 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-246 |
| Cow position: | chr25:18450961-18451161 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 53, 176 |
| Conread position: | 46-248 |
| Cow position: | chr25:13062084-13061881 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 54, 191 |
| Conread position: | 46-310 |
| Cow position: | chr25:20346357-20346098 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-322 |
| Cow position: | chr25:29152433-29152163 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 58, 108 |
| Conread position: | 46-327 |
| Cow position: | chr25:13693042-13692766 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr25:2368625-2368892 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 46-328 |
| Cow position: | chr25:12941047-12940770 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 46-328 |
| Cow position: | chr25:13782673-13782950 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 225 |
| Conread position: | 46-328 |
| Cow position: | chr25:16924776-16924500 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 226 |
| Conread position: | 46-328 |
| Cow position: | chr25:18178311-18178593 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 46-328 |
| Cow position: | chr25:18888118-18887841 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 238 |
| Conread position: | 46-328 |
| Cow position: | chr25:19338974-19338697 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr25:20631250-20631526 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 46-328 |
| Cow position: | chr25:25508333-25508605 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 151 |
| Conread position: | 46-328 |
| Cow position: | chr25:27020970-27020695 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 46-328 |
| Cow position: | chr25:28861233-28861510 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 46-328 |
| Cow position: | chr25:34345378-34345102 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 46-330 |
| Cow position: | chr25:35627822-35627547 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 214 |
| Conread position: | 48-328 |
| Cow position: | chr25:11041975-11042242 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 126 |
| Conread position: | 48-328 |
| Cow position: | chr25:17587939-17587665 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 182 |
| Conread position: | 48-328 |
| Cow position: | chr25:24215868-24215599 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 55, 72 |
| Conread position: | 53-328 |
| Cow position: | chr25:13958435-13958710 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 228 |
| Conread position: | 56-235 |
| Cow position: | chr25:29358117-29358298 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 137 |
| Conread position: | 56-328 |
| Cow position: | chr25:18192016-18191753 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 56-336 |
| Cow position: | chr25:19922176-19922451 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 219 |
| Conread position: | 148-328 |
| Cow position: | chr25:17558435-17558263 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 98, 140 |
| Conread position: | 158-332 |
| Cow position: | chr25:22149301-22149463 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 162-327 |
| Cow position: | chr25:14538182-14538026 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 88, 47 |
| Conread position: | 180-319 |
| Cow position: | chr25:35649168-35649037 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 92 |
| Conread position: | 180-328 |
| Cow position: | chr25:34506322-34506182 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 101 |
Show alignments to all cow chromosomes.